Detail information of GWHGAAEX017992/evm.TU.scaffold_89.66


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|339629861|ref|YP_004721504.1|8.00E-80AMP-dependent synthetase and ligase [Sulfobacillus acidophilus TPY]
KOGKOG12560Long-chain acyl-CoA synthetases (AMP-forming)
nrgi|743770727|ref|XP_010915654.1|0PREDICTED: long chain acyl-CoA synthetase 4-like [Elaeis guineensis]
Swissprottr|Q9T0A0|LACS4_ARATH0Long chain acyl-CoA synthetase 4
trEMBLtr|M0T6Y5|M0T6Y5_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P14370_001}
TAIRAT4G238500AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009028780492950778+
Transcript Sequence

Network for GWHGAAEX017992

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.27AMP-binding475212.30E-101
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01897ACSL, fadD Metabolic pathways map01100
Fatty acid metabolismmap01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Ferroptosismap04216
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms140.760
SRR2545915Juvenile tuber92.740
SRP108465SRR5643513five period of Gastrodia elata96.880
SRR5643514five period of Gastrodia elata63.360
SRR5643515five period of Gastrodia elata77.660
SRR5643524five period of Gastrodia elata75.760
SRR5643525five period of Gastrodia elata75.530
SRR5643528five period of Gastrodia elata79.780
SRR5643658five period of Gastrodia elata66.800
SRR5643659five period of Gastrodia elata60.970
SRR5643660five period of Gastrodia elata64.770
SRR5643661five period of Gastrodia elata57.950
SRR5643662five period of Gastrodia elata54.670
SRR5643663five period of Gastrodia elata59.840
SRR5643664five period of Gastrodia elata50.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_181.860
SRR6049655Rhizomagastrodiae_C368-T10_good_188.960
SRR6049656Rhizomagastrodiae_C368-T07_good_179.160
SRR6049657Rhizomagastrodiae_C368-T07_good_180.590
SRR6049658Rhizomagastrodiae_C368-T04_good_177.220
SRR6049659Rhizomagastrodiae_C368-T04_good_179.720
SRR6049660Rhizomagastrodiae_C368-T01_good_175.110
SRR6049661Rhizomagastrodiae_C368-T04_good_170.680
SRR6049662Rhizomagastrodiae_C368-T01_good_179.020
SRR6049663Rhizomagastrodiae_C368-T01_good_174.220
SRR6049664Rhizomagastrodiae_C368-T10_good_1102.410
SRR6049665Rhizomagastrodiae_C368-T10_good_1102.410
SRP279888GastroGastrodia elata tuber 50.39
JuvenJuvenile tuber73.95
Mother_GastroMother tuber of Gastrodia elata 112.83
Mother_JuvenMother tuber of Juvenile 110.38