Detail information of GWHGAAEX017993/evm.TU.scaffold_89.67
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 7.00E-97 | FOG: PPR repeat |
| nr | gi|743800084|ref|XP_010925750.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Elaeis guineensis] |
| Swissprot | tr|Q9FIX3|PP407_ARATH | 2.00E-97 | Pentatricopeptide repeat-containing protein At5g39710 |
| trEMBL | tr|M0SG48|M0SG48_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P19820_001} |
| TAIR | AT5G39710 | 7.00E-97 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000090 | 2960870 | 2962732 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017993
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 65 | 94 | 0.019 |
| PF13041.5 | PPR_2 | 96 | 144 | 6.80E-12 |
| PF13041.5 | PPR_2 | 201 | 250 | 6.60E-11 |
| PF01535.19 | PPR | 275 | 304 | 0.00035 |
| PF13041.5 | PPR_2 | 306 | 354 | 2.00E-18 |
| PF12854.6 | PPR_1 | 372 | 403 | 1.80E-11 |
| PF13041.5 | PPR_2 | 411 | 460 | 2.10E-19 |
| PF13041.5 | PPR_2 | 482 | 530 | 2.30E-08 |
| PF13812.5 | PPR_3 | 541 | 598 | 0.0061 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.440 |
| SRR2545915 | Juvenile tuber | 1.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.260 |
| SRR5643514 | five period of Gastrodia elata | 2.390 | |
| SRR5643515 | five period of Gastrodia elata | 1.830 | |
| SRR5643524 | five period of Gastrodia elata | 1.560 | |
| SRR5643525 | five period of Gastrodia elata | 0.900 | |
| SRR5643528 | five period of Gastrodia elata | 0.770 | |
| SRR5643658 | five period of Gastrodia elata | 0.750 | |
| SRR5643659 | five period of Gastrodia elata | 2.100 | |
| SRR5643660 | five period of Gastrodia elata | 2.170 | |
| SRR5643661 | five period of Gastrodia elata | 1.940 | |
| SRR5643662 | five period of Gastrodia elata | 2.090 | |
| SRR5643663 | five period of Gastrodia elata | 2.210 | |
| SRR5643664 | five period of Gastrodia elata | 2.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.44 |
| Juven | Juvenile tuber | 2.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.14 | |
| Mother_Juven | Mother tuber of Juvenile | 2.64 |