Detail information of GWHGAAEX017995/evm.TU.scaffold_89.69


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|297621203|ref|YP_003709340.1|4.00E-30serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
KOGKOG06981.00E-135Serine/threonine protein phosphatase
nrgi|672107006|ref|XP_008789261.1|0PREDICTED: probable protein phosphatase 2C 52 [Phoenix dactylifera]
Swissprottr|Q6L5C4|P2C52_ORYSJ2.00E-157Probable protein phosphatase 2C 52
trEMBLtr|W1P4Y6|W1P4Y6_AMBTC5.00E-170Uncharacterized protein {ECO:0000313|EMBL:ERN02988.1}
TAIRAT5G531401.00E-135Protein phosphatase 2C family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009029749453004728+
Transcript Sequence

Network for GWHGAAEX017995

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00481.20PP2C1023392.10E-63
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0043169Molecular Functioncation binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.230
SRR2545915Juvenile tuber30.830
SRP108465SRR5643513five period of Gastrodia elata29.470
SRR5643514five period of Gastrodia elata39.800
SRR5643515five period of Gastrodia elata28.770
SRR5643524five period of Gastrodia elata34.470
SRR5643525five period of Gastrodia elata35.700
SRR5643528five period of Gastrodia elata25.190
SRR5643658five period of Gastrodia elata35.630
SRR5643659five period of Gastrodia elata26.790
SRR5643660five period of Gastrodia elata25.980
SRR5643661five period of Gastrodia elata26.730
SRR5643662five period of Gastrodia elata25.910
SRR5643663five period of Gastrodia elata24.990
SRR5643664five period of Gastrodia elata26.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.330
SRR6049655Rhizomagastrodiae_C368-T10_good_131.380
SRR6049656Rhizomagastrodiae_C368-T07_good_133.010
SRR6049657Rhizomagastrodiae_C368-T07_good_124.030
SRR6049658Rhizomagastrodiae_C368-T04_good_122.810
SRR6049659Rhizomagastrodiae_C368-T04_good_121.630
SRR6049660Rhizomagastrodiae_C368-T01_good_131.030
SRR6049661Rhizomagastrodiae_C368-T04_good_126.730
SRR6049662Rhizomagastrodiae_C368-T01_good_145.730
SRR6049663Rhizomagastrodiae_C368-T01_good_139.060
SRR6049664Rhizomagastrodiae_C368-T10_good_134.750
SRR6049665Rhizomagastrodiae_C368-T10_good_134.750
SRP279888GastroGastrodia elata tuber 33.48
JuvenJuvenile tuber34.06
Mother_GastroMother tuber of Gastrodia elata 17.09
Mother_JuvenMother tuber of Juvenile 21.87