Gene detail

Detail information of GWHGAAEX017996/evm.TU.scaffold_89.70

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|448820186\|ref\|YP_007413348.1\|	4.00E-66	ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
KOG	KOG0342	0	ATP-dependent RNA helicase pitchoune
nr	gi\|695068254\|ref\|XP_009381063.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q0DBU5\|RH31_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 31
trEMBL	tr\|M0RLM3\|M0RLM3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P26490_001}
TAIR	AT5G63630	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000090	3006340	3015614	+

Transcript Sequence
>GWHTAAEX017996 ATGGCAGTCCAACTCCTTCCAATCCGCCTGTTAGTCCCAACTTCTTCGATCGTCCGAGCTTGCCGTTGTTCCACCTTGTCGGGCGTTTTTTTCGCAAAGCTGAGGCTGAAGAACTCGCCTTTCTCTTCAAATCGGCGTATTTTCGTTTGCCATCGGGGATATTCTGGTGGCCGAGCCTTCTCTACACGACCTGCAAGTCCGGGGGCGCGCGTTTTAGGGCAGAACAAGAGCCTCATTGAAGACGAAGCCGAACTCAGCGATTGGGTCAGCGACCTCAAGAGCAACTCTTTTCGCACAAGGGACAGCAGTGAAGACGAGGGTTCGAGTCGAGATCGGGGTAATCAGAGAAGCAGGGATATTGATAGAGGTTGGCTGACTAAAGGGAGAGGGAGGGACTCTAGCTCTGCTGCTTTTAGTCGGCCATCTTCGAAGATGAATCGGGGTAGTGATTCCGATGGGTTTTCAAATCGCACTCAGAGGGGTTCGTCCTCGAGAAAGCGAATCGATAGCGGTGACAATGCAGAGGATTTCCGTGGTGGGAGGATGAATGAACGCAGAAAGCTATCTGGGGTTTCTTCGGATTCCAGAAAAGGGCTTGGTAATCGGGGTAGTGACTCCGATGGGTATTCAAATCGCACTCAGAGGGGTTCATCCTCGAGAAGGCGAATCGATAGTGGTGACAATGCAGATGATTTCCGTGGTGGGAGGACGAATGGATTCAGAAAGCTATCTGGGGTTTCTTCAGATTCCAGAAAAGGGCTTGGTAATCGATTTGGGGCTTCTTCTGCTTTCAATAAGAGAGGCAAGGGGGATTATAAAACTGGCGGTATCTTAGACCGACCAAAGACACAGCAAGATCTTGTTGTATCGGATGAAGAAGAGGATGAGGAGGATGAGGAGGAAGAGAGTGAAGAGGAGGAAGTGGAGGAAAGCGATGATGGAATGACAGATTTTGATAATGATTTTTTTGGCGACAAGGAATATTCCAAGGATAGGATTGCCAAAGATGCCTCTGAAAAAGGCCGTTCTTTTGTGTCAAGTGGTGTTGATATCGTAAAAGCAGTACCAAAAGCTTCTGTGCCTGCCAGTGATTCGTACTTGAGTGAGACTAGATTTGACCAATTTCCCCTTTCTCCGCTCTCACTGAAAGGCATAAAGGCCGCTGGTTATGAAAGGATGACTCTAGTGCAGGAAGCAACTTTTCCGGTCATTCTCAATGGCAAAGATGTGCTTGCTAAAGCTAGGACAGGAACTGGCAAAACTGTAGCATTTTTGCTTCCAGCAATTGAGGTGGTTGCAAAGTTACCTCCACCTGATCGTGATAATAGAAGACCACCTATCAATGTGCTTGTAGTTTGCCCAACCAGGGAGCTTGCAGATCAAGCTGCCGCAGAAGCCTCAAAGTTGTCGAGGTTTCATGCTTCTATTGGCGTTCAGGTTGTTATGGGTGGTACTAGGTTGGCCCTAGAACAGAAACGCATGCAAGCTAACCCATGCCAGATACTTGTAGCAACACCCGGAAGGCTCAGAGATCATATGGAGAATACACCGGGATTTACTTCTCGCCTAAACGGAGTGAAAGTTCTTGTTCTCGATGAAGCTGATAGATTGTTAGATATGGGATTTCGGAAAGATATTGAAAAGATTGTTGCTGCACTGCCAAAACAAAGGCAAACACTTCTTTTTTCTGCCACAGTTCCAGATGAGGTTCGTCAAATCTGCTACATTGCTATGAAAAGAGACAATGAATTTATTAGTACAGTTGAAGAGGGCTCTGAGGAGACACACTCCCAGGTTACACAGATGCATTTGATTGCACCATTAGAGCAACAGTTTTCGATACTCTATCGTATTTTGACTGATCATATTGCTGAAGATGTTGATTACAAGGTAATTGTGTTCTGTACGACTGCAATGGTTACTAAATTTGTTGCTGATTTTTTGGGCGAGCTGAATTTGAATGTTCGGGAAATGCACTCTAGAAAGCCACAAACATATAGGACTAGGGTTTCCAAGGAGTTCAAGGAGTCTAAGGGCATTATTCTTGTCAGTTCCGATGTCTCAGCACGAGGAGTTGACTATCCTGATGTCTCCCTTGTTATGCAGGTGGGAGTGCCTGCTGATAGAGATCAATACATTCATCGGCTTGGTAGAACTGGCAGGAAAGGCAAAGTAGGAAAAGGCTTACTTCTATTGGCACCATGGGAAGATTTCTTCTTAAATAACATTCGAGACTTGCCAATAACTAAGGCCGAGTCTCCTCCCATTGGCCCTGACACCAGGAAAAAAGTGGAGAGGGCGATTGCTCAAGTGGAGATGAAGAGCAAGGAATCTGCATACCAAGCATGGCTTGGCTATTACAACTCCATCAGAGATGTCGGGCGCGAGAAGTCAAGGCTTGTGCTCCTTGCTAATGAGTTCAGCCGCAGCATGGGCCTCGACAACCCTCCCGCACTCTCTTTGATTATTCTCAGAAAGATGGGACTGAACAATGTCCCAGGATTGCGCACCAAATAA

Network for GWHGAAEX017996

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	395	572	6.60E-44
PF00271.30	Helicase_C	613	723	2.90E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.530
SRP064423	SRR2545915	Juvenile tuber	10.370
SRP108465	SRR5643513	five period of Gastrodia elata	10.340
	SRR5643514	five period of Gastrodia elata	12.920
	SRR5643515	five period of Gastrodia elata	8.790
	SRR5643524	five period of Gastrodia elata	9.160
	SRR5643525	five period of Gastrodia elata	1.280
	SRR5643528	five period of Gastrodia elata	0.920
	SRR5643658	five period of Gastrodia elata	0.830
	SRR5643659	five period of Gastrodia elata	14.450
	SRR5643660	five period of Gastrodia elata	14.320
	SRR5643661	five period of Gastrodia elata	12.910
	SRR5643662	five period of Gastrodia elata	11.570
	SRR5643663	five period of Gastrodia elata	9.970
	SRR5643664	five period of Gastrodia elata	12.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.300
SRP279888	Gastro	Gastrodia elata tuber	13.37
	Juven	Juvenile tuber	24.98
	Mother_Gastro	Mother tuber of Gastrodia elata	2.32
	Mother_Juven	Mother tuber of Juvenile	6.94