Detail information of GWHGAAEX017998/evm.TU.scaffold_89.72


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG42852.00E-119Mitotic phosphoprotein
nrgi|672109717|ref|XP_008791646.1|1.03E-130PREDICTED: nucleoporin NUP53 [Phoenix dactylifera]
Swissprottr|O04326|NUP35_ARATH7.00E-120Nuclear pore complex protein NUP35 {ECO:0000303|PubMed:21189294}
trEMBLtr|V4SMQ8|V4SMQ8_9ROSI2.00E-124Nuclear pore complex protein NUP35 {ECO:0000256|PIRNR:PIRNR038119}
TAIRAT3G163102.00E-119mitotic phosphoprotein N' end (MPPN) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009030200273046628-
Transcript Sequence

Network for GWHGAAEX017998

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05172.12Nup35_RRM1872705.60E-23
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14313NUP35, NUP53 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006913Biological Processnucleocytoplasmic transport
GO:0003676Molecular Functionnucleic acid binding
GO:0031965Cellular Componentnuclear membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.590
SRR2545915Juvenile tuber10.990
SRP108465SRR5643513five period of Gastrodia elata22.720
SRR5643514five period of Gastrodia elata19.520
SRR5643515five period of Gastrodia elata21.760
SRR5643524five period of Gastrodia elata21.430
SRR5643525five period of Gastrodia elata25.410
SRR5643528five period of Gastrodia elata29.970
SRR5643658five period of Gastrodia elata18.060
SRR5643659five period of Gastrodia elata27.460
SRR5643660five period of Gastrodia elata30.870
SRR5643661five period of Gastrodia elata27.560
SRR5643662five period of Gastrodia elata34.090
SRR5643663five period of Gastrodia elata26.490
SRR5643664five period of Gastrodia elata28.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.400
SRR6049655Rhizomagastrodiae_C368-T10_good_128.870
SRR6049656Rhizomagastrodiae_C368-T07_good_143.510
SRR6049657Rhizomagastrodiae_C368-T07_good_136.890
SRR6049658Rhizomagastrodiae_C368-T04_good_149.250
SRR6049659Rhizomagastrodiae_C368-T04_good_155.690
SRR6049660Rhizomagastrodiae_C368-T01_good_154.260
SRR6049661Rhizomagastrodiae_C368-T04_good_152.680
SRR6049662Rhizomagastrodiae_C368-T01_good_152.520
SRR6049663Rhizomagastrodiae_C368-T01_good_163.080
SRR6049664Rhizomagastrodiae_C368-T10_good_133.850
SRR6049665Rhizomagastrodiae_C368-T10_good_133.850
SRP279888GastroGastrodia elata tuber 25.69
JuvenJuvenile tuber22.94
Mother_GastroMother tuber of Gastrodia elata 31.78
Mother_JuvenMother tuber of Juvenile 21.40