Detail information of GWHGAAEX017999/evm.TU.scaffold_89.74
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|357393893|ref|YP_004908734.1| | 6.00E-101 | putative endoglucanase precursor [Kitasatospora setae KM-6054] |
| nr | gi|743755840|ref|XP_010913688.1| | 0 | PREDICTED: endoglucanase 6 [Elaeis guineensis] |
| Swissprot | tr|Q8L7I0|GUN19_ARATH | 0 | Endoglucanase 19 (Precursor) |
| trEMBL | tr|W1PWF4|W1PWF4_AMBTC | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
| TAIR | AT4G11050 | 0 | glycosyl hydrolase 9C3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000090 | 3047648 | 3054313 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017999
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00759.18 | Glyco_hydro_9 | 25 | 485 | 2.60E-146 |
| PF09478.9 | CBM49 | 558 | 633 | 2.40E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01179 | E3.2.1.4 | Metabolic pathways | map01100 |
| Starch and sucrose metabolism | map00500 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0030246 | Molecular Function | carbohydrate binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.120 |
| SRR2545915 | Juvenile tuber | 12.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.240 |
| SRR5643514 | five period of Gastrodia elata | 35.520 | |
| SRR5643515 | five period of Gastrodia elata | 25.620 | |
| SRR5643524 | five period of Gastrodia elata | 25.710 | |
| SRR5643525 | five period of Gastrodia elata | 2.230 | |
| SRR5643528 | five period of Gastrodia elata | 1.390 | |
| SRR5643658 | five period of Gastrodia elata | 2.880 | |
| SRR5643659 | five period of Gastrodia elata | 39.360 | |
| SRR5643660 | five period of Gastrodia elata | 31.600 | |
| SRR5643661 | five period of Gastrodia elata | 38.690 | |
| SRR5643662 | five period of Gastrodia elata | 27.080 | |
| SRR5643663 | five period of Gastrodia elata | 33.050 | |
| SRR5643664 | five period of Gastrodia elata | 23.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 113.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 123.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 84.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 92.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 63.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 62.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 71.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 161.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 118.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 195.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 195.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.66 |
| Juven | Juvenile tuber | 17.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.12 | |
| Mother_Juven | Mother tuber of Juvenile | 4.78 |