Detail information of GWHGAAEX018002/evm.TU.scaffold_89.77
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 9.00E-125 | FOG: PPR repeat |
| nr | gi|743756719|ref|XP_010918328.1| | 1.93E-171 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g49240-like [Elaeis guineensis] |
| Swissprot | tr|Q9M3A8|PP273_ARATH | 3.00E-125 | Pentatricopeptide repeat-containing protein At3g49240 |
| trEMBL | tr|C5XQ70|C5XQ70_SORBI | 3.00E-156 | Putative uncharacterized protein Sb03g026930 {ECO:0000313|EMBL:EES03220.1} |
| TAIR | AT3G49240 | 9.00E-125 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000090 | 3094747 | 3106256 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018002
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13812.5 | PPR_3 | 120 | 173 | 0.00011 |
| PF01535.19 | PPR | 198 | 224 | 0.094 |
| PF01535.19 | PPR | 232 | 258 | 0.00082 |
| PF01535.19 | PPR | 310 | 338 | 0.18 |
| PF01535.19 | PPR | 350 | 379 | 1.80E-05 |
| PF13041.5 | PPR_2 | 381 | 428 | 3.80E-10 |
| PF13041.5 | PPR_2 | 451 | 500 | 2.90E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.980 |
| SRR2545915 | Juvenile tuber | 8.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.810 |
| SRR5643514 | five period of Gastrodia elata | 8.270 | |
| SRR5643515 | five period of Gastrodia elata | 6.840 | |
| SRR5643524 | five period of Gastrodia elata | 8.240 | |
| SRR5643525 | five period of Gastrodia elata | 8.370 | |
| SRR5643528 | five period of Gastrodia elata | 6.040 | |
| SRR5643658 | five period of Gastrodia elata | 6.490 | |
| SRR5643659 | five period of Gastrodia elata | 11.200 | |
| SRR5643660 | five period of Gastrodia elata | 10.610 | |
| SRR5643661 | five period of Gastrodia elata | 9.140 | |
| SRR5643662 | five period of Gastrodia elata | 11.550 | |
| SRR5643663 | five period of Gastrodia elata | 10.050 | |
| SRR5643664 | five period of Gastrodia elata | 10.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.82 |
| Juven | Juvenile tuber | 10.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.25 | |
| Mother_Juven | Mother tuber of Juvenile | 8.01 |