Detail information of GWHGAAEX018003/evm.TU.scaffold_89.76


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-07FOG: PPR repeat
nrgi|502103677|ref|XP_004492340.1|4.74E-08PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like [Cicer arietinum]
Swissprottr|Q9LN69|PPR50_ARATH1.00E-07Putative pentatricopeptide repeat-containing protein At1g19290
trEMBLtr|M0TYP6|M0TYP6_MUSAM2.00E-08Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08870_001}
TAIRAT1G192901.00E-07Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009030990843099359-
Transcript Sequence

Network for GWHGAAEX018003

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module9

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_249901.90E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata2.460
SRR5643514five period of Gastrodia elata0.000
SRR5643515five period of Gastrodia elata1.130
SRR5643524five period of Gastrodia elata1.820
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata1.010
SRR5643659five period of Gastrodia elata1.880
SRR5643660five period of Gastrodia elata5.560
SRR5643661five period of Gastrodia elata1.070
SRR5643662five period of Gastrodia elata6.100
SRR5643663five period of Gastrodia elata1.650
SRR5643664five period of Gastrodia elata1.030
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.810
SRR6049655Rhizomagastrodiae_C368-T10_good_113.700
SRR6049656Rhizomagastrodiae_C368-T07_good_10.000
SRR6049657Rhizomagastrodiae_C368-T07_good_14.100
SRR6049658Rhizomagastrodiae_C368-T04_good_14.360
SRR6049659Rhizomagastrodiae_C368-T04_good_13.450
SRR6049660Rhizomagastrodiae_C368-T01_good_11.360
SRR6049661Rhizomagastrodiae_C368-T04_good_16.690
SRR6049662Rhizomagastrodiae_C368-T01_good_11.260
SRR6049663Rhizomagastrodiae_C368-T01_good_16.170
SRR6049664Rhizomagastrodiae_C368-T10_good_11.190
SRR6049665Rhizomagastrodiae_C368-T10_good_11.190
SRP279888GastroGastrodia elata tuber 12.89
JuvenJuvenile tuber2.62
Mother_GastroMother tuber of Gastrodia elata 6.59
Mother_JuvenMother tuber of Juvenile 0.00