Detail information of GWHGAAEX018005/evm.TU.scaffold_89.79
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|254293472|ref|YP_003059495.1| | 3.00E-22 | cation diffusion facilitator family transporter [Hirschia baltica ATCC 49814] |
| KOG | KOG1484 | 1.00E-71 | Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) |
| nr | gi|743766430|ref|XP_010913456.1| | 0 | PREDICTED: uncharacterized protein LOC105039137 [Elaeis guineensis] |
| Swissprot | tr|Q9SI03|MTP12_ARATH | 3.00E-72 | Metal tolerance protein 12 |
| trEMBL | tr|A0A068U0W2|A0A068U0W2_COFCA | 0 | Coffea canephora |
| TAIR | AT2G04620 | 1.00E-71 | Cation efflux family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000090 | 3143527 | 3146529 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018005
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01306.18 | LacY_symp | 366 | 490 | 4.70E-06 |
| PF01545.20 | Cation_efflux | 415 | 732 | 4.80E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008643 | Biological Process | carbohydrate transport |
| GO:0006812 | Biological Process | cation transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0005351 | Molecular Function | sugar:proton symporter activity |
| GO:0008324 | Molecular Function | cation transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.810 |
| SRR2545915 | Juvenile tuber | 10.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.560 |
| SRR5643514 | five period of Gastrodia elata | 9.740 | |
| SRR5643515 | five period of Gastrodia elata | 10.500 | |
| SRR5643524 | five period of Gastrodia elata | 10.710 | |
| SRR5643525 | five period of Gastrodia elata | 13.330 | |
| SRR5643528 | five period of Gastrodia elata | 10.100 | |
| SRR5643658 | five period of Gastrodia elata | 11.230 | |
| SRR5643659 | five period of Gastrodia elata | 13.070 | |
| SRR5643660 | five period of Gastrodia elata | 13.990 | |
| SRR5643661 | five period of Gastrodia elata | 12.760 | |
| SRR5643662 | five period of Gastrodia elata | 14.030 | |
| SRR5643663 | five period of Gastrodia elata | 14.910 | |
| SRR5643664 | five period of Gastrodia elata | 12.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.74 |
| Juven | Juvenile tuber | 16.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.64 | |
| Mother_Juven | Mother tuber of Juvenile | 12.15 |