Detail information of GWHGAAEX018013/evm.TU.scaffold_89.87


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG09887.00E-139RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference
nrgi|695076918|ref|XP_009385772.1|0PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Musa acuminata subsp. malaccensis]
Swissprottr|O82188|RDR5_ARATH9.00E-146Probable RNA-dependent RNA polymerase 5
trEMBLtr|D7TBH5|D7TBH5_VITVI9.00E-172Putative uncharacterized protein {ECO:0000313|EMBL:CBI28010.3}
TAIRAT2G199207.00E-139RNA-dependent RNA polymerase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009032524743305921+
Transcript Sequence

Network for GWHGAAEX018013

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05183.11RdRP554772.40E-72
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003968Molecular FunctionRNA-directed RNA polymerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.120
SRR2545915Juvenile tuber5.440
SRP108465SRR5643513five period of Gastrodia elata4.460
SRR5643514five period of Gastrodia elata5.010
SRR5643515five period of Gastrodia elata4.680
SRR5643524five period of Gastrodia elata5.050
SRR5643525five period of Gastrodia elata8.850
SRR5643528five period of Gastrodia elata10.130
SRR5643658five period of Gastrodia elata7.290
SRR5643659five period of Gastrodia elata6.460
SRR5643660five period of Gastrodia elata5.270
SRR5643661five period of Gastrodia elata3.170
SRR5643662five period of Gastrodia elata5.720
SRR5643663five period of Gastrodia elata6.460
SRR5643664five period of Gastrodia elata5.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.280
SRR6049655Rhizomagastrodiae_C368-T10_good_15.660
SRR6049656Rhizomagastrodiae_C368-T07_good_13.660
SRR6049657Rhizomagastrodiae_C368-T07_good_14.230
SRR6049658Rhizomagastrodiae_C368-T04_good_11.850
SRR6049659Rhizomagastrodiae_C368-T04_good_12.400
SRR6049660Rhizomagastrodiae_C368-T01_good_13.260
SRR6049661Rhizomagastrodiae_C368-T04_good_11.570
SRR6049662Rhizomagastrodiae_C368-T01_good_12.090
SRR6049663Rhizomagastrodiae_C368-T01_good_11.420
SRR6049664Rhizomagastrodiae_C368-T10_good_12.550
SRR6049665Rhizomagastrodiae_C368-T10_good_12.550
SRP279888GastroGastrodia elata tuber 4.31
JuvenJuvenile tuber7.96
Mother_GastroMother tuber of Gastrodia elata 5.15
Mother_JuvenMother tuber of Juvenile 7.81