Detail information of GWHGAAEX018014/evm.TU.scaffold_89.88


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG09886.00E-80RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference
nrgi|731406760|ref|XP_010656270.1|1.11E-126PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Vitis vinifera]
Swissprottr|Q5QMN4|RDR4_ORYSJ7.00E-92Probable RNA-dependent RNA polymerase 4
trEMBLtr|D7TBH5|D7TBH5_VITVI4.00E-127Putative uncharacterized protein {ECO:0000313|EMBL:CBI28010.3}
TAIRAT2G199306.00E-80RNA-dependent RNA polymerase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009033060293318064+
Transcript Sequence

Network for GWHGAAEX018014

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05183.11RdRP161901.10E-31
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003968Molecular FunctionRNA-directed RNA polymerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.140
SRR2545915Juvenile tuber8.700
SRP108465SRR5643513five period of Gastrodia elata12.640
SRR5643514five period of Gastrodia elata10.530
SRR5643515five period of Gastrodia elata10.060
SRR5643524five period of Gastrodia elata9.280
SRR5643525five period of Gastrodia elata19.080
SRR5643528five period of Gastrodia elata18.370
SRR5643658five period of Gastrodia elata15.650
SRR5643659five period of Gastrodia elata11.240
SRR5643660five period of Gastrodia elata15.010
SRR5643661five period of Gastrodia elata9.140
SRR5643662five period of Gastrodia elata13.950
SRR5643663five period of Gastrodia elata14.650
SRR5643664five period of Gastrodia elata17.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.750
SRR6049655Rhizomagastrodiae_C368-T10_good_112.910
SRR6049656Rhizomagastrodiae_C368-T07_good_17.250
SRR6049657Rhizomagastrodiae_C368-T07_good_18.670
SRR6049658Rhizomagastrodiae_C368-T04_good_13.850
SRR6049659Rhizomagastrodiae_C368-T04_good_12.850
SRR6049660Rhizomagastrodiae_C368-T01_good_17.180
SRR6049661Rhizomagastrodiae_C368-T04_good_13.640
SRR6049662Rhizomagastrodiae_C368-T01_good_13.400
SRR6049663Rhizomagastrodiae_C368-T01_good_13.050
SRR6049664Rhizomagastrodiae_C368-T10_good_16.000
SRR6049665Rhizomagastrodiae_C368-T10_good_16.000
SRP279888GastroGastrodia elata tuber 13.34
JuvenJuvenile tuber17.77
Mother_GastroMother tuber of Gastrodia elata 17.11
Mother_JuvenMother tuber of Juvenile 18.67