Gene detail

Detail information of GWHGAAEX018034/evm.TU.scaffold_89.111

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|114799234\|ref\|YP_761477.1\|	8.00E-10	phosphoprotein phosphatase [Hyphomonas neptunium ATCC 15444]
KOG	KOG1605	1.00E-57	TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
nr	gi\|743772849\|ref\|XP_010916740.1\|	1.72E-77	PREDICTED: probable C-terminal domain small phosphatase [Elaeis guineensis]
Swissprot	tr\|Q5S7T7\|TIM50_PHYIN	6.00E-21	Mitochondrial import inner membrane translocase subunit TIM50 (Precursor)
trEMBL	tr\|C5YUM5\|C5YUM5_SORBI	1.00E-71	Putative uncharacterized protein Sb09g006400 {ECO:0000313\|EMBL:EES19205.1}
TAIR	AT5G45700	1.00E-57	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000090	4030639	4059115	-

Transcript Sequence
>GWHTAAEX018034 ATGGAGACTGGAGCAACGAGATTTAAGCCTTTAATAAACCCGTTAACTAAGCCAAATCTAAGTTTAATTCTAGCAGATTTTCCAACTAGAGTAAGGGAATGGGGAGAAGCTAAAGAAGCTACTTCTTCATTAGAAAAGAAAAGTGCCGGAGAGCCTTTATATTCAGAAATAGTACCTTCGATGATGTCCTTAAAGGACCGAACACTCGGGGATGATCTGATTAATTTGAAGGTTTGGTTTGGAAATGTCGATTGTTCCACTCCCTATTTGGTTGTCGTCCCTCTTGTTTGCAAGTTACTCGGTTTACCGCATTTCTCGTTGATATGTTCTGACTTGATGCGAATTTTGTGGGATTTTCGTTTAATCAGGTTGGCGTCTAAGATCCTTATGGCCTTCGGTTGTTTCTCATTTTTGATGACCACGTTATTCGCTCCTTTGTCTTTGTTTGTTCACTGCAGGTTGTTTGTTTGGTCTTTGGGCATTTCTATGGATGGCACTTCATTGGTTGCAATTTTGGAAAAAGTCTGGCCCAACTATGTCACAAAGAACAAGTGGGTAGGTGTCCATCTAGACCAGGCGGCTGCACTCCCCAAGAAGACAGGTAGACAAGCGCCATTACAACGCCTAGGGCACTCGACCGTTACGCCAAACCAGTTTAAATTCCCCGAAGCTCCAATCACCGTCCAAAAGTCTCCTCGCTCGATCTACTACATCCATTTCCAATGCAGAGAGAGGCGAGACCCTTCAGATAAATCCCATCTATCCGTTCCCCCACAAACAATTCTTCAGAGCCAAAAAAAAAAAAAAAAAATGGTTTGCAAAAAAATTTGCCGGAAGACCGTTGCCCGCAAACCACCCTTCAAGCCTTCCCCTTCCTCTCTGAAAACCCTCACCCTCTCCCTCCGCTCCTGCCGCAGGCATCTCATAAAGATCTTCTCCTCTCTGGCCCTCTTCCATTCTCCGGCCAAGCCCAAGAAGGGCTTCCACCGCCTCCCGCCTTCCTCAAATCCCAACCGCAAAACCCTCTTCTTGGACCTTGACGAAACTCTAGTCCATTCCAGCACCGGGACCCCTCCCGACCTCTTTGACTTTGTAGTACATCCGGTGATCGACGGCCGGCCCTTGACCTTTTACGTCCTGAAGCGGCCAGGCGCAGATGAGCTCCTGCGGGCGGCCTCAGAACTTTACGAAGTGGTCGTCTTCACGGCCGGCCTCAGGGAGTACGCCTCCCTCGTGCTTGATCGCCTCGACCCAGATGGCCGCAAGATTGCCCACAGGCTCTACCGCGACTCGTGCCGGCGAACGGAGGAGGCCAAGCTTGTGAAGGATCTCTCAAGGCTCGATCGAGATCTGGGTAACGTGCTGATCATCGACGACAACCCTGCCAGCTACGCCCTGCAGAAGGAGAACGCCTTCCCCGTCCCCCCATTCGTCGGCGACCTCGCCGATCGCGAGCTCGTCCGTGTCATCGAGTTCTTGAATTATGCAGCGGGCTTCGGGGACACCAGGCAGGCCCTGGCTCTCTACCTCTCTTCCCGCCCATTGGGCGGCCTGTGAAAACATTCGGTTATTATCTTGCTGTTCGTTCACGTAGGTCAATTATAATTCCTAGAACAAAAGTGTATTTTTCTTTTTTT

Network for GWHGAAEX018034

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03031.17	NIF	340	501	5.10E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016791	Molecular Function	phosphatase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.540
	SRR5643514	five period of Gastrodia elata	1.330
	SRR5643515	five period of Gastrodia elata	0.740
	SRR5643524	five period of Gastrodia elata	0.700
	SRR5643525	five period of Gastrodia elata	0.050
	SRR5643528	five period of Gastrodia elata	0.050
	SRR5643658	five period of Gastrodia elata	0.190
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.660
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	0.06