Detail information of GWHGAAEX018037/evm.TU.scaffold_89.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502234|ref|YP_001957951.1| | 4.00E-16 | hypothetical protein Aasi_0851 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 2.00E-133 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|720080954|ref|XP_010242129.1| | 1.36E-158 | PREDICTED: U-box domain-containing protein 17 [Nelumbo nucifera] |
| Swissprot | tr|Q9C7R6|PUB17_ARATH | 5.00E-134 | U-box domain-containing protein 17 |
| trEMBL | tr|A0A068TLK9|A0A068TLK9_COFCA | 2.00E-152 | Coffea canephora |
| TAIR | AT1G29340 | 2.00E-133 | plant U-box 17 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000090 | 4268900 | 4271055 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018037
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 276 | 347 | 1.70E-19 |
| PF00514.22 | Arm | 403 | 440 | 2.90E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.280 |
| SRR2545915 | Juvenile tuber | 0.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.100 |
| SRR5643514 | five period of Gastrodia elata | 3.970 | |
| SRR5643515 | five period of Gastrodia elata | 2.400 | |
| SRR5643524 | five period of Gastrodia elata | 2.200 | |
| SRR5643525 | five period of Gastrodia elata | 1.940 | |
| SRR5643528 | five period of Gastrodia elata | 1.460 | |
| SRR5643658 | five period of Gastrodia elata | 3.960 | |
| SRR5643659 | five period of Gastrodia elata | 0.980 | |
| SRR5643660 | five period of Gastrodia elata | 0.610 | |
| SRR5643661 | five period of Gastrodia elata | 0.990 | |
| SRR5643662 | five period of Gastrodia elata | 0.320 | |
| SRR5643663 | five period of Gastrodia elata | 1.040 | |
| SRR5643664 | five period of Gastrodia elata | 0.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.62 |
| Juven | Juvenile tuber | 1.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.55 | |
| Mother_Juven | Mother tuber of Juvenile | 0.61 |