Gene detail

Detail information of GWHGAAEX018043/evm.TU.scaffold_9.10

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2605	1.00E-139	OTU (ovarian tumor)-like cysteine protease
nr	gi\|672121503\|ref\|XP_008784052.1\|	0	PREDICTED: OTU domain-containing protein 5-B-like isoform X3 [Phoenix dactylifera]
trEMBL	tr\|B9HQ41\|B9HQ41_POPTR	0	OTU-like cysteine protease family protein {ECO:0000313\|EMBL:EEE87563.1}
TAIR	AT2G27350	1.00E-139	OTU-like cysteine protease family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000001	823774	840972	-

Transcript Sequence
>GWHTAAEX018043 CCTAATTAATTGTATCCGAACTTATCCCAACTTCATCCTTGTTGAATCGAAGGAATGAACTTCCGAACCTCCAAACCAACAGGCGACTATCATGGCAAAACCATGAGATCTCTCATCCATGTGCTGAATTTGTTCCGTGTGCTGAATTTGTAATTCGTGAGAGAGAAGCGACGTCACATAGACAGCCTTGTCGCCGGCCGCCGGAGAAGGGCGCTAAATCGACGATTATGCCGTGGGAGAGAAGCCCTTGGAATCCCACATTGATCACAGGCTAAGGGTTACCTCCCAAGTTCCATTTACATTTGCTATCCCTTACCGTTTTCGCCCTTTTTCATTGCTAAAAGAAAAATATTGTAAGAGAAAAAGAGTACAGGCCTTTCTTTCGCAACTTGCGCACCATAAACCCTAGGTACTCCTTTGGATTCATATGTTTGTGCTCTTTAGTGATTTTTTTTATCCCAGGCCCTTCCATCGAGGTAATCGTTCATGGCTTTTCCGATGCCTTTCTTGACTTCCTGATGTACTGGATTCGGCTTGTTATCTAAGCTTATTGGTCGATTCTTAGCTCTTCCTCTTGGGAATGTCTTTTTTTTTTTAGCGGTATTAATGATTGCTGGGTTTTTGGTAGGCTATGCTAGGTTTTTGGTAGGGTATTAGTTTTCGTCTTTCTTCCGCTGGTTTTGGGTTTAGGGAAGAGTTTCTTCTTGGTGCTCTGGGTTGAAGTTGTGGGTTTGGTTCTCATGAGAATTGTTTGGGGGATGCAGAAATTGGCCTGTGGGGAGGAGATCGCACAGGGTTGTAAAGATTTGTTTTGCAAAGGAATTGGCATCACTGCACCTAAGGCCAGAACTCGTGACAAACCTGTAGGCCGTGTTTGGTGTCTCTGATTTGAGCGGAGGGACGCAAAGTGGAGAGGAAAAAAAGGGTGTTTCTGTAGAGCAGCATGACTCGAATTCTGGTTCAGCGGGGCTCAGGAAGCTCTTCTACAAGCCAAAACCGTGCACCTTCAAATTCAGTTCCATCACCTTCTGCGCAACAAGCAGGAATTACGAACAAAGAAGAGGAACAGAAGGAGCAAATTCAGAATCCTGGCTGTTTGGATGACCATATACGGCATAGTCCTTGTGCTGATGAGAAAGTTGCTAATACTAATGAAATTTCAGTTGATGTCACAGCCATTGAACAGGTTGAGAACAAGAAATCTTGCATTGAAGAATCTGTTGAGCCTACCATTCGCGGAAGAGTCTTAGGTGGGCCTCATTTATCTGATAAGCTGGAATGCCATGAGTCTGCTATTGTAGGTGGTGGACCATCGCAAACACTCATTGGTAGGTCAAACCCGCCGCCCCCTCCTGTCCCACCTCCAAAGCCATCTTCACCAAGCATTGGTTCAAGAAGATCAGGGCTTGGATTTTCTAATGCAATGCCGACTGGTTCAAGAAGACAATTTCCACGTCCTATTGTTTCAACTTGGCCATCACCTTCGGGCTCTCGTCCTTCGTCGCCTCGATCTTATGTTGATGGTGAAGGGTACAATAGTGCAGATGAACATGGTCCATGCTTTGCCGCCTCTTATAATGATGTGGAAAGAGAGCGACTATTTGAAATTGAAATCAGGCGTGTGAAAGGTTTAGACGTTAAGAAGATGGTGGAAGACGGCAATTGCCTATTTAGAGCAATTGCTGACCAAGTTTATGGTGATCCTGAAACTTATGATTTAGCTCGGCAGATGTGCATTGATTATTTGGAAAGGGAAATGGATCATTTCTCACAGTTTATAACCGAGGGGTTTACATCTTATTGCAAGAGAAAAAGGCGAGATAAGGTATATGGAAATAACTTGGAAATTCAGGCGTTCTCAGAGATGTACAATCGTCCAATTCACATTTATTGTTACAGCACAGAGCCTATCAACATCTTCCATGGAAGCTATCTCACAGACACACCACCAATTAGGTTAAGTTATCACCATGGAAATCACTACAATTCACTTGTTGATCCCCGCAGATTAACAATTGGGGCTGGACTTGGATTCAGCTGTCTTCGGGAAGTCAATGCTGATAAGGACCAGGTGAAGGCTGCTATCAAAGCCCAGCAAGACCAGCAGATTGACAATGCACTTCTAGCAGAGGGTCGCTTTTACTCGGACTTGGAGTTGACAGAGAAAGAGATTGAGCGCACGGTTATGGAGGCCTCTCGAGCTGAGTATCTCGGTGAAGACATGTTGAGGCTGCAGCTTCACTCGAGAGAAACTTCCACCTCTAATGCCGAGCCATCATCTTCTGGCACAGTGCCTTTGTCTTCGGGAAGAAGGGAAAAGGCACCGGTAGAGGCAGGGCTTAGCAGCAGCGTGCAAGTTGTTCTGTCCATGGGCTTTAGCTATCTTCAGGTCATTGAAGCGTTCAGTATATTTGGAGATGACGTCGATTCTATTATCTGCTACTTGCTAGAAATGGGAGGCGTAGCAGTCTCTTCCCCTGATGGAAGCAGCCGGCTAAAAGGCAAGGCAACCGAGTGACAAAACCTATGTACATGTGCCACTGGATTATTATTATTACAACATAGGTTTTAGCAAAGTTGGGTGTTAGCTATATATATATAATGAAATATCTCATATAATTCTCTTTCACCGTGAAAACCTACCAAAGTACCATATTCTCTGCATTCGATATATGATCAACATTATAACTTTGTACTTTTTATCTATTCTGTACTTCTGTATTTTGTGGGGCATGTGTCTGTTCGCTCGTAGTGTGTATTATAATGCCCAAGTTTTTATTCCTGATAAAAATAACTCATCATATAGGGGCCATATAGATATATTTTTGCAATGCTATTACAGAATTTTATATGAAATGATGCC

Network for GWHGAAEX018043

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02338.18	OTU	238	347	2.60E-15

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	pathway	mapID
K12655	OTUD5, DUBA	RIG-I-like receptor signaling pathway	map04622

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	53.640
SRP064423	SRR2545915	Juvenile tuber	38.110
SRP108465	SRR5643513	five period of Gastrodia elata	41.070
	SRR5643514	five period of Gastrodia elata	51.200
	SRR5643515	five period of Gastrodia elata	40.950
	SRR5643524	five period of Gastrodia elata	48.130
	SRR5643525	five period of Gastrodia elata	56.780
	SRR5643528	five period of Gastrodia elata	49.540
	SRR5643658	five period of Gastrodia elata	65.720
	SRR5643659	five period of Gastrodia elata	40.520
	SRR5643660	five period of Gastrodia elata	41.400
	SRR5643661	five period of Gastrodia elata	39.180
	SRR5643662	five period of Gastrodia elata	38.500
	SRR5643663	five period of Gastrodia elata	39.610
	SRR5643664	five period of Gastrodia elata	38.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.590
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.460
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.460
SRP279888	Gastro	Gastrodia elata tuber	35.28
	Juven	Juvenile tuber	27.63
	Mother_Gastro	Mother tuber of Gastrodia elata	46.06
	Mother_Juven	Mother tuber of Juvenile	41.87