Detail information of GWHGAAEX018046/evm.TU.scaffold_9.15


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19470Leucine rich repeat proteins, some proteins contain F-box
nrgi|743856218|ref|XP_010941793.1|0PREDICTED: transport inhibitor response 1-like protein Os05g0150500 [Elaeis guineensis]
Swissprottr|Q570C0|TIR1_ARATH0Protein TRANSPORT INHIBITOR RESPONSE 1
trEMBLtr|M0SHA1|M0SHA1_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P23850_001}
TAIRAT3G629800F-box/RNI-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000111444091181687+
Transcript Sequence

Network for GWHGAAEX018046

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.32F-box14500.00024
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
K14485TIR1 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.420
SRR2545915Juvenile tuber31.910
SRP108465SRR5643513five period of Gastrodia elata33.810
SRR5643514five period of Gastrodia elata25.460
SRR5643515five period of Gastrodia elata28.760
SRR5643524five period of Gastrodia elata29.680
SRR5643525five period of Gastrodia elata15.310
SRR5643528five period of Gastrodia elata17.260
SRR5643658five period of Gastrodia elata14.970
SRR5643659five period of Gastrodia elata24.670
SRR5643660five period of Gastrodia elata26.150
SRR5643661five period of Gastrodia elata26.690
SRR5643662five period of Gastrodia elata35.010
SRR5643663five period of Gastrodia elata27.440
SRR5643664five period of Gastrodia elata35.050
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.780
SRR6049655Rhizomagastrodiae_C368-T10_good_123.640
SRR6049656Rhizomagastrodiae_C368-T07_good_125.830
SRR6049657Rhizomagastrodiae_C368-T07_good_123.740
SRR6049658Rhizomagastrodiae_C368-T04_good_130.250
SRR6049659Rhizomagastrodiae_C368-T04_good_130.480
SRR6049660Rhizomagastrodiae_C368-T01_good_124.440
SRR6049661Rhizomagastrodiae_C368-T04_good_128.410
SRR6049662Rhizomagastrodiae_C368-T01_good_127.630
SRR6049663Rhizomagastrodiae_C368-T01_good_125.540
SRR6049664Rhizomagastrodiae_C368-T10_good_128.020
SRR6049665Rhizomagastrodiae_C368-T10_good_128.020
SRP279888GastroGastrodia elata tuber 49.67
JuvenJuvenile tuber58.17
Mother_GastroMother tuber of Gastrodia elata 44.94
Mother_JuvenMother tuber of Juvenile 69.36