Detail information of GWHGAAEX018052/evm.TU.scaffold_9.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2074 | 8.00E-177 | RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB1 |
| nr | gi|743766781|ref|XP_010913638.1| | 0 | PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q3ECP0|TFB1A_ARATH | 0 | Probable RNA polymerase II transcription factor B subunit 1-1 |
| trEMBL | tr|M0S2F0|M0S2F0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P23430_001} |
| TAIR | AT1G55750 | 8.00E-177 | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000001 | 1732058 | 1806232 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018052
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08567.10 | PH_TFIIH | 20 | 89 | 3.10E-08 |
| PF03909.16 | BSD | 200 | 250 | 1.00E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | BSD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03141 | TFIIH1, GTF2H1, TFB1 | Basal transcription factors | map03022 |
| Nucleotide excision repair | map03420 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.520 |
| SRR2545915 | Juvenile tuber | 11.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.840 |
| SRR5643514 | five period of Gastrodia elata | 4.810 | |
| SRR5643515 | five period of Gastrodia elata | 4.330 | |
| SRR5643524 | five period of Gastrodia elata | 4.240 | |
| SRR5643525 | five period of Gastrodia elata | 4.710 | |
| SRR5643528 | five period of Gastrodia elata | 4.160 | |
| SRR5643658 | five period of Gastrodia elata | 5.020 | |
| SRR5643659 | five period of Gastrodia elata | 4.630 | |
| SRR5643660 | five period of Gastrodia elata | 4.830 | |
| SRR5643661 | five period of Gastrodia elata | 4.040 | |
| SRR5643662 | five period of Gastrodia elata | 4.440 | |
| SRR5643663 | five period of Gastrodia elata | 5.920 | |
| SRR5643664 | five period of Gastrodia elata | 5.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.73 |
| Juven | Juvenile tuber | 5.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.58 | |
| Mother_Juven | Mother tuber of Juvenile | 5.27 |