Detail information of GWHGAAEX018055/evm.TU.scaffold_9.34


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08003.00E-104FOG: Predicted E3 ubiquitin ligase
nrgi|695010166|ref|XP_009391745.1|2.43E-119PREDICTED: RING-H2 finger protein ATL46-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FL07|ATL46_ARATH8.00E-105RING-H2 finger protein ATL46
trEMBLtr|B9S4M2|B9S4M2_RICCO6.00E-114Ring finger protein, putative {ECO:0000313|EMBL:EEF41445.1}
TAIRAT5G402503.00E-104RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000122402652253944-
Transcript Sequence

Network for GWHGAAEX018055

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21431866.80E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.890
SRR2545915Juvenile tuber8.390
SRP108465SRR5643513five period of Gastrodia elata8.720
SRR5643514five period of Gastrodia elata7.790
SRR5643515five period of Gastrodia elata7.920
SRR5643524five period of Gastrodia elata8.210
SRR5643525five period of Gastrodia elata11.240
SRR5643528five period of Gastrodia elata11.250
SRR5643658five period of Gastrodia elata10.450
SRR5643659five period of Gastrodia elata7.280
SRR5643660five period of Gastrodia elata7.490
SRR5643661five period of Gastrodia elata5.470
SRR5643662five period of Gastrodia elata7.270
SRR5643663five period of Gastrodia elata8.030
SRR5643664five period of Gastrodia elata8.290
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.260
SRR6049655Rhizomagastrodiae_C368-T10_good_110.210
SRR6049656Rhizomagastrodiae_C368-T07_good_17.680
SRR6049657Rhizomagastrodiae_C368-T07_good_16.500
SRR6049658Rhizomagastrodiae_C368-T04_good_14.680
SRR6049659Rhizomagastrodiae_C368-T04_good_15.650
SRR6049660Rhizomagastrodiae_C368-T01_good_15.800
SRR6049661Rhizomagastrodiae_C368-T04_good_15.330
SRR6049662Rhizomagastrodiae_C368-T01_good_16.190
SRR6049663Rhizomagastrodiae_C368-T01_good_15.240
SRR6049664Rhizomagastrodiae_C368-T10_good_16.500
SRR6049665Rhizomagastrodiae_C368-T10_good_16.500
SRP279888GastroGastrodia elata tuber 7.01
JuvenJuvenile tuber8.62
Mother_GastroMother tuber of Gastrodia elata 36.46
Mother_JuvenMother tuber of Juvenile 29.44