Gene detail

Detail information of GWHGAAEX018058/evm.TU.scaffold_9.47

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|256830069\|ref\|YP_003158797.1\|	2.00E-70	cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM 4028]
KOG	KOG3022	8.00E-144	Predicted ATPase, nucleotide-binding
nr	gi\|27371964\|gb\|AAN86569.1\|	0	nucleotide binding protein [Cypripedium parviflorum var. pubescens]
Swissprot	tr\|Q8H1Q2\|NBP35_ARATH	0	Cytosolic Fe-S cluster assembly factor NBP35 {ECO:0000255\|HAMAP-Rule:MF_03038}
trEMBL	tr\|Q8GUW6\|Q8GUW6_CYPPP	0	Cytosolic Fe-S cluster assembly factor NBP35 {ECO:0000256\|HAMAP-Rule:MF_03038}
TAIR	AT5G50960	8.00E-144	nucleotide binding protein 35

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000001	2972426	2997460	+

Transcript Sequence
>GWHTAAEX018058 TTGACCAGTTCGACCCTCGCGTTATCATTCATTGTGTATTTCTACGTATCTTTTGCGCTAAAACTAAATCCACAGGGGTCGGTCCAGATTAGGCAAAGCTAAAATCGGATAAAAAGAACAGGGTTCCTTCTCCACCTGCGATCGCGACTGCAGTGGCGTCTGGGGAGGCGTTAAAGTCCATCTCACCTGCAAGTGCCAACACTCAATGTCAACGGGAACGGGTCTTTCGGTTCTTGACCTTGCCGGAATTTGGTGCTGATCTAGAAATTGGAGACGACTCTTTGATTGTGACTAAAGTTACTGCTGCTCTTATTGGATCACTGTTTTATCTCTTTTTGTATTGTGCTGGGTGCCATTCTAAAAACATACCAATCATATCATTATTATCAGAGTTCTACTGTACATCGGCCCCATAAAAAAACTGAACAGAGTTCTACCGTACATTGGCCCTAGAAACACTTGATAACATAGAAGATGCCATGTTGGTATTGTAGCAACCATGATAGGAGATGCCAAATTTGGGTGATTATAGATTGCTTCCAAATTTGGCCTAATTTGCTTTTTTGTATGGGATATATATTGTTTGAAGATTTTCTTACCAATCTCTCATGAAGGGATTTCTGAAGCTCTCTTGGGGTTTTGTTGTAGCTTTCTGTTTTCTTGCGGTTTCATTTTTCCACATAGAGCCTGATTTCAAAGTTTGCAAAAAATCACATAAAGGTGTTAAAACAAGGGGAAAATCAGTGTTCGAAATGGAGAATGGAAATGATGAAATCCCAGAAAATGCTAACGAGCATTGCCCTGGGCCTCAGTCAGACTCTGCTGGGAAGTCTGATGCTTGTGATGGCTGCCCTAATCAGCAAATATGTGCCACTGCTCCAAAAGGCCCAGATCCAGATTTGGTAGTAATAGCTGAGAGAATGGCTTCTGTGAAGCACAAGATACTAGTGTTGTCAGGCAAGGGTGGTGTTGGAAAGAGCACATTTTCAGCCCAACTGTCGTTTGCCCTCACGAACAAGGACTACCAGGTCGGCCTGCTGGACATAGACATTTGCGGTCCCAGCATCCCAAAGATGTTTGGCCTGGAGGGCCAGGACATCCGTACAAACAACTTCGGCTGGTCTCCCATCTACCCGAGCTCCAATCTGGGAGTGATGTCCATCGGCTTCATGCTTCCCCACCCCGATGAAGCCATCATCTGGCGCGGCCCGCGCAAGAACGGCCTTATTAAGCAATTCTTAACACAGGTTGACTGGGGCGCCATCGACTATCTTGTGGTGGACGCCCCACCCGGCACCTCGGATGAGCACATATCCATCGTTCAGTTCCTTCAGGCCTCGGGAATCGACGGCGCGGTCATAGTCACAACCCCACAGCAGATCTCTCTGATCGACGTGCGCAAGGAAATAAGCTTTTGCAAGAAGGTTGGCATCCGAGTCCTCGGGGTCGTGGAAAACATGAGCGGGCTGAGGCAACCGCTGCTGGATCTCAAGTTCGAGAGGGCAACTGTTAGTGGAGCAGCTTCTGAGACTGAGGATGTCACGGACTGGGCTAGTAATTATATAGCCCAGAATGCACCAGAGCTACTGACCCTCTTTGCATGTAGTGAGGTTTTCGATAGCAGTGCAGGTGGTGCGGCGAAGATGTGCACAGAAATGGGGGTTCCCTTCCTTGGCAGGGTGCCATTGGATCCTCACCTTGGAAAGGTGGCCGAAGAAGGAAGATCCTGCTTTGAGGATCACAACTGCAGCGGCTCAAGTGCTCCAGCCCTTCTAAGGGTAGTGGATCAACTCATTGCTTTTCATCAGTGATGATTTTCTTACAGTAGCTTATCTTTTGCTGCTGGTCTACACTTCAGTTCTGCATCGTTACTTTTAGAAGGTTCAAAAGTTAAAAACATTGTGTACAGGTTTGGAAAATTTTCTTGTGCTTGTATTTTAATTTGTTTGCTTTTCCAGGGAATATATACATTTAGGTCTTTGTCTTAGTGAGCCGTTTGTTTTTGGTTTGTGCATCATGTTATCACTTTTTATTTTTAGTGCATTTCAATGAGCTATTGAAATTAAGTAATGTATGGTGAAAGGAAAAATATATCTTTTTGAAGAATAAACATACGAATACTAATATTTTTTATTTTTGATGAAGCTTTGTTCTACTCCTATC

Network for GWHGAAEX018058

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10609.8	ParA	108	291	1.30E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016226	Biological Process	iron-sulfur cluster assembly
GO:0051536	Molecular Function	iron-sulfur cluster binding
GO:0005524	Molecular Function	ATP binding
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.330
SRP064423	SRR2545915	Juvenile tuber	39.470
SRP108465	SRR5643513	five period of Gastrodia elata	46.650
	SRR5643514	five period of Gastrodia elata	45.750
	SRR5643515	five period of Gastrodia elata	47.510
	SRR5643524	five period of Gastrodia elata	46.410
	SRR5643525	five period of Gastrodia elata	42.980
	SRR5643528	five period of Gastrodia elata	44.780
	SRR5643658	five period of Gastrodia elata	39.950
	SRR5643659	five period of Gastrodia elata	46.570
	SRR5643660	five period of Gastrodia elata	53.400
	SRR5643661	five period of Gastrodia elata	52.010
	SRR5643662	five period of Gastrodia elata	53.750
	SRR5643663	five period of Gastrodia elata	48.120
	SRR5643664	five period of Gastrodia elata	58.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	57.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.940
SRP279888	Gastro	Gastrodia elata tuber	52.85
	Juven	Juvenile tuber	51.19
	Mother_Gastro	Mother tuber of Gastrodia elata	56.44
	Mother_Juven	Mother tuber of Juvenile	66.48