Detail information of GWHGAAEX018059/evm.TU.scaffold_9.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21840Tuftelin-interacting protein TIP39, contains G-patch domain
nrgi|743762143|ref|XP_010906679.1|0PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Elaeis guineensis]
Swissprottr|Q9SHG6|STIP1_ARATH0Septin and tuftelin-interacting protein 1 homolog 1
trEMBLtr|F6HE87|F6HE87_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB50533.1}
TAIRAT1G170700GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000131728663177933+
Transcript Sequence

Network for GWHGAAEX018059

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12457.7TIP_N41015.90E-20
PF01585.22G-patch1782206.40E-15
PF07842.11GCFC3966652.30E-87
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.650
SRR2545915Juvenile tuber17.380
SRP108465SRR5643513five period of Gastrodia elata14.110
SRR5643514five period of Gastrodia elata14.380
SRR5643515five period of Gastrodia elata16.020
SRR5643524five period of Gastrodia elata12.070
SRR5643525five period of Gastrodia elata18.340
SRR5643528five period of Gastrodia elata15.530
SRR5643658five period of Gastrodia elata17.380
SRR5643659five period of Gastrodia elata19.600
SRR5643660five period of Gastrodia elata18.380
SRR5643661five period of Gastrodia elata17.960
SRR5643662five period of Gastrodia elata22.550
SRR5643663five period of Gastrodia elata18.470
SRR5643664five period of Gastrodia elata20.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.600
SRR6049655Rhizomagastrodiae_C368-T10_good_111.370
SRR6049656Rhizomagastrodiae_C368-T07_good_116.300
SRR6049657Rhizomagastrodiae_C368-T07_good_122.040
SRR6049658Rhizomagastrodiae_C368-T04_good_122.920
SRR6049659Rhizomagastrodiae_C368-T04_good_130.650
SRR6049660Rhizomagastrodiae_C368-T01_good_122.630
SRR6049661Rhizomagastrodiae_C368-T04_good_121.670
SRR6049662Rhizomagastrodiae_C368-T01_good_113.860
SRR6049663Rhizomagastrodiae_C368-T01_good_116.360
SRR6049664Rhizomagastrodiae_C368-T10_good_112.580
SRR6049665Rhizomagastrodiae_C368-T10_good_112.580
SRP279888GastroGastrodia elata tuber 23.94
JuvenJuvenile tuber31.44
Mother_GastroMother tuber of Gastrodia elata 15.12
Mother_JuvenMother tuber of Juvenile 26.77