Detail information of GWHGAAEX018060/evm.TU.scaffold_9.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|170290521|ref|YP_001737337.1| | 3.00E-37 | small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8] |
| KOG | KOG0070 | 1.00E-111 | GTP-binding ADP-ribosylation factor Arf1 |
| nr | gi|672145192|ref|XP_008796507.1| | 1.46E-119 | PREDICTED: ADP-ribosylation factor 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q06396|ARF1_ORYSJ | 8.00E-113 | ADP-ribosylation factor 1 |
| trEMBL | tr|A5BCP0|A5BCP0_VITVI | 1.00E-116 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN59803.1} |
| TAIR | AT1G10630 | 1.00E-111 | ADP-ribosylation factor A1F |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000001 | 3179276 | 3207219 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018060
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00025.20 | Arf | 6 | 177 | 2.40E-76 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07937 | ARF1 | Phospholipase D signaling pathway | map04072 |
| Endocytosis | map04144 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.780 |
| SRR2545915 | Juvenile tuber | 1.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.270 |
| SRR5643514 | five period of Gastrodia elata | 1.750 | |
| SRR5643515 | five period of Gastrodia elata | 1.600 | |
| SRR5643524 | five period of Gastrodia elata | 1.830 | |
| SRR5643525 | five period of Gastrodia elata | 7.820 | |
| SRR5643528 | five period of Gastrodia elata | 5.200 | |
| SRR5643658 | five period of Gastrodia elata | 2.450 | |
| SRR5643659 | five period of Gastrodia elata | 0.750 | |
| SRR5643660 | five period of Gastrodia elata | 0.530 | |
| SRR5643661 | five period of Gastrodia elata | 0.730 | |
| SRR5643662 | five period of Gastrodia elata | 1.280 | |
| SRR5643663 | five period of Gastrodia elata | 1.250 | |
| SRR5643664 | five period of Gastrodia elata | 1.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.04 |
| Juven | Juvenile tuber | 7.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.71 | |
| Mother_Juven | Mother tuber of Juvenile | 8.33 |