Detail information of GWHGAAEX018063/evm.TU.scaffold_9.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2578 | 1.00E-81 | Transcription factor E2F/dimerization partner (TDP)-like proteins |
| nr | gi|743766376|ref|XP_010913426.1| | 4.38E-155 | PREDICTED: E2F transcription factor-like E2FE isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8LSZ4|E2FE_ARATH | 3.00E-94 | E2F transcription factor-like E2FE |
| trEMBL | tr|J3LGX5|J3LGX5_ORYBR | 8.00E-134 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G38920.1} |
| TAIR | AT3G01330 | 1.00E-81 | DP-E2F-like protein 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000001 | 3531521 | 3545555 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018063
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02319.19 | E2F_TDP | 17 | 81 | 5.50E-21 |
| PF02319.19 | E2F_TDP | 149 | 232 | 2.40E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005667 | Cellular Component | transcription factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.840 |
| SRR2545915 | Juvenile tuber | 34.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.730 |
| SRR5643514 | five period of Gastrodia elata | 25.030 | |
| SRR5643515 | five period of Gastrodia elata | 18.560 | |
| SRR5643524 | five period of Gastrodia elata | 24.930 | |
| SRR5643525 | five period of Gastrodia elata | 11.230 | |
| SRR5643528 | five period of Gastrodia elata | 10.180 | |
| SRR5643658 | five period of Gastrodia elata | 13.640 | |
| SRR5643659 | five period of Gastrodia elata | 15.140 | |
| SRR5643660 | five period of Gastrodia elata | 16.680 | |
| SRR5643661 | five period of Gastrodia elata | 17.610 | |
| SRR5643662 | five period of Gastrodia elata | 13.840 | |
| SRR5643663 | five period of Gastrodia elata | 12.800 | |
| SRR5643664 | five period of Gastrodia elata | 14.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.11 |
| Juven | Juvenile tuber | 27.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.01 | |
| Mother_Juven | Mother tuber of Juvenile | 24.98 |