Detail information of GWHGAAEX018064/evm.TU.scaffold_9.55


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743821508|ref|XP_010932049.1|3.56E-64PREDICTED: transcription factor SPATULA [Elaeis guineensis]
Swissprottr|Q9FUA4|SPT_ARATH7.00E-38Transcription factor SPATULA
trEMBLtr|D6N0W3|D6N0W3_PRUPE8.00E-48ALCATRAZ/SPATULA-like protein {ECO:0000313|EMBL:ADG56590.1}
TAIRAT4G369304.00E-37basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000136865453733273-
Transcript Sequence

Network for GWHGAAEX018064

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.25HLH761224.90E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983Molecular Functionprotein dimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.860
SRR2545915Juvenile tuber8.200
SRP108465SRR5643513five period of Gastrodia elata9.760
SRR5643514five period of Gastrodia elata7.060
SRR5643515five period of Gastrodia elata7.660
SRR5643524five period of Gastrodia elata6.640
SRR5643525five period of Gastrodia elata3.370
SRR5643528five period of Gastrodia elata2.900
SRR5643658five period of Gastrodia elata2.220
SRR5643659five period of Gastrodia elata7.770
SRR5643660five period of Gastrodia elata9.330
SRR5643661five period of Gastrodia elata7.960
SRR5643662five period of Gastrodia elata7.260
SRR5643663five period of Gastrodia elata6.790
SRR5643664five period of Gastrodia elata9.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.730
SRR6049655Rhizomagastrodiae_C368-T10_good_14.970
SRR6049656Rhizomagastrodiae_C368-T07_good_18.940
SRR6049657Rhizomagastrodiae_C368-T07_good_19.970
SRR6049658Rhizomagastrodiae_C368-T04_good_110.310
SRR6049659Rhizomagastrodiae_C368-T04_good_112.120
SRR6049660Rhizomagastrodiae_C368-T01_good_110.180
SRR6049661Rhizomagastrodiae_C368-T04_good_110.350
SRR6049662Rhizomagastrodiae_C368-T01_good_16.480
SRR6049663Rhizomagastrodiae_C368-T01_good_19.040
SRR6049664Rhizomagastrodiae_C368-T10_good_18.340
SRR6049665Rhizomagastrodiae_C368-T10_good_18.340
SRP279888GastroGastrodia elata tuber 15.01
JuvenJuvenile tuber14.26
Mother_GastroMother tuber of Gastrodia elata 7.60
Mother_JuvenMother tuber of Juvenile 8.68