Detail information of GWHGAAEX018066/evm.TU.scaffold_9.58


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672145960|ref|XP_008796916.1|8.51E-134PREDICTED: zinc finger CCCH domain-containing protein 46 isoform X1 [Phoenix dactylifera]
Swissprottr|Q5Z807|C3H46_ORYSJ1.00E-81Zinc finger CCCH domain-containing protein 46
trEMBLtr|M0RKQ0|M0RKQ0_MUSAM2.00E-105Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P23250_001}
TAIRAT1G753401.00E-61Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000141142824149259+
Transcript Sequence

Network for GWHGAAEX018066

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.23zf-CCCH5271.50E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
K14321NUPL2, NUP42, CG1 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.870
SRR2545915Juvenile tuber7.860
SRP108465SRR5643513five period of Gastrodia elata4.270
SRR5643514five period of Gastrodia elata4.890
SRR5643515five period of Gastrodia elata5.110
SRR5643524five period of Gastrodia elata4.730
SRR5643525five period of Gastrodia elata6.550
SRR5643528five period of Gastrodia elata5.180
SRR5643658five period of Gastrodia elata5.800
SRR5643659five period of Gastrodia elata9.000
SRR5643660five period of Gastrodia elata6.610
SRR5643661five period of Gastrodia elata9.160
SRR5643662five period of Gastrodia elata10.040
SRR5643663five period of Gastrodia elata9.530
SRR5643664five period of Gastrodia elata10.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.800
SRR6049655Rhizomagastrodiae_C368-T10_good_18.550
SRR6049656Rhizomagastrodiae_C368-T07_good_15.070
SRR6049657Rhizomagastrodiae_C368-T07_good_16.760
SRR6049658Rhizomagastrodiae_C368-T04_good_16.600
SRR6049659Rhizomagastrodiae_C368-T04_good_17.410
SRR6049660Rhizomagastrodiae_C368-T01_good_16.370
SRR6049661Rhizomagastrodiae_C368-T04_good_15.840
SRR6049662Rhizomagastrodiae_C368-T01_good_15.440
SRR6049663Rhizomagastrodiae_C368-T01_good_15.280
SRR6049664Rhizomagastrodiae_C368-T10_good_15.560
SRR6049665Rhizomagastrodiae_C368-T10_good_15.560
SRP279888GastroGastrodia elata tuber 12.78
JuvenJuvenile tuber9.10
Mother_GastroMother tuber of Gastrodia elata 5.60
Mother_JuvenMother tuber of Juvenile 5.65