Detail information of GWHGAAEX018068/evm.TU.scaffold_9.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427701621|ref|YP_007044843.1| | 3.00E-94 | oxidoreductase NAD-binding domain-containing protein [Cyanobium gracile PCC 6307] |
| KOG | KOG1158 | 0 | NADP/FAD dependent oxidoreductase |
| nr | gi|115470583|ref|NP_001058890.1| | 0 | Os07g0147900 [Oryza sativa Japonica Group] |
| Swissprot | tr|O23877|FENR3_ORYSJ | 0 | Ferredoxin--NADP reductase, embryo isozyme, chloroplastic (Precursor) |
| trEMBL | tr|Q0D8L9|Q0D8L9_ORYSJ | 0 | Ferredoxin--NADP reductase {ECO:0000256|RuleBase:RU004465} |
| TAIR | AT4G05390 | 0 | root FNR 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000001 | 4614501 | 4618549 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018068
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00175.20 | NAD_binding_1 | 171 | 285 | 2.50E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02641 | petH | Metabolic pathways | map01100 |
| Photosynthesis | map00195 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.740 |
| SRR2545915 | Juvenile tuber | 25.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.050 |
| SRR5643514 | five period of Gastrodia elata | 33.230 | |
| SRR5643515 | five period of Gastrodia elata | 31.470 | |
| SRR5643524 | five period of Gastrodia elata | 28.820 | |
| SRR5643525 | five period of Gastrodia elata | 33.260 | |
| SRR5643528 | five period of Gastrodia elata | 33.590 | |
| SRR5643658 | five period of Gastrodia elata | 43.180 | |
| SRR5643659 | five period of Gastrodia elata | 24.490 | |
| SRR5643660 | five period of Gastrodia elata | 27.700 | |
| SRR5643661 | five period of Gastrodia elata | 30.490 | |
| SRR5643662 | five period of Gastrodia elata | 33.860 | |
| SRR5643663 | five period of Gastrodia elata | 39.570 | |
| SRR5643664 | five period of Gastrodia elata | 33.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 36.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 33.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 53.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 51.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 57.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.40 |
| Juven | Juvenile tuber | 23.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 51.14 | |
| Mother_Juven | Mother tuber of Juvenile | 38.75 |