Gene detail

Detail information of GWHGAAEX018074/evm.TU.scaffold_9.74

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1877	Putative transmembrane protein cmp44E
nr	gi\|743844130\|ref\|XP_010938251.1\|	PREDICTED: uncharacterized protein LOC105057345 isoform X2 [Elaeis guineensis]
trEMBL	tr\|M0RU05\|M0RU05_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P20750_001}
TAIR	AT5G26850	Uncharacterized protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000001	5432654	5491891	+

Transcript Sequence
>GWHTAAEX018074 CTAATTTTTTTTGCTTATATATATTTCATACATGTCTATTTTCATGTTGTTAAATGAAGTCTCTTTTATCATTTTTTAAATGGAGTGGACAGACCTTTCTGGCGCCTCCCTGCCCGACTACGTATATTCCTGCTAAACTTTCTTTTTCACGCTTTAAGTTATTACCCGCTACAGTAGTGCTCGAAACCCAAACAAGCATGGGATTCCTCCCGAGAAAGCTCTCACCTGCGTGCGAAAATCTTTGCCTCTGTTGTCCGGCGCTGAGGCCGAGTTCCCGGAGGCCTGTGAAGCGCTACAGAAAGTTGCTTTCCGAGATCTTCCCCAAAAACCTTGACGGAATCCCAAATGAAAGGAAAATTATAAAGCTTTGTGAATATGCTGCCAAGAACCCTTCTCGCATCCCTAAGGTATCAAGGTTTCTTGAACAGAAATTCTACAAAGAATTACAAAATGAGCATTTTAATGGCATCAAAATTATCATTGAGGTCTATTGTAAGCTTCTTGTTATATGCAGGGAGCAAATGGCTTACTTTGCTTGGAACCTTTTGAGTGATGTCATTACTCTATTGGAGGCAAAACAGCTGGATTGCTTAAGAATTCTTGGATGCCAAGCATTGACTAAATTTATTTATAATCAGGCTGATGGTACCTATGCCCGCTGTATAGATAGTATTGTTTCCAGCGTTTGCAGGCTGGCAAGAAAGGAGAGAGAGAAACATAATAATTTACTAAAAGCTGCAAGCCTGCAATGTTTGTCATCAATGGTTTGGTTTATGTCCGAATATTCATACATATTTTCTGATTTTGACGAGATCATTTATTCCATTCTTGAAAATCATGGGAATGGTGAGCGGTCAAAGGATGATGTAGGATCTGAGAAACATCATAATTGGGTTGATGAAGTGATTAGATGTGAAACAAGAACAGGGCCAGTCATGCATGATGATGTTAGTCTTAAGAGTATGATAATACAACCACTGCCAGAGATAAAGGACTCTACTTTGCTGGCAAGAGAGGAGTGCGAAAATCCAAAAGTGTGGTCTGAAATATGCATTCAAAAACTGGCTGGACTGGGAAAGGAGAGCACAACTATGCGCAGAATACTGGATCCAATGTTTTGCTACTTTGATAGACACAAACTTTGGACTCCTGAAGTTGGATTGGCTCAAAATGTCTTATGGAACCTGATGTGTTTATCAAAAATATCCGGAAATGAGCAATTTATCTTGATTGCTTTAGTCCGACATCTAGACAACAAGGACATCACACATGATCCTCAACTAAAATCCAATATAGTTCAGATTGCCACTTTCTTGGTTAAACAATTGAGATTAAGGTCTGTGGTTGCTGATATTGGCGTTGCTAGTAATTTATGCAGACATTTGAGAAAAAGCCTTCATCTTACACTAGAAATAACAAAACCTGACGATGCAAGTTGGAACTTTTTACTTCAAGATTCTATCGAAAATTGCTTATTGGAGATTGTTAAAGGGTTTGCAGATGCAAACCCACTTTATGATATGATGGCTATAACCCTTGAGAAGATGGCCAACACTGCTGTTGCAAGAGCTACAATAGGATCTTTACTGATCCTTGTTCGCCTCATTTCCTTGACATCTTCTTTGTCTCATTCAGAGTTGGACTTTCCAGAGGCACTTTTGCTACAGGTTCTCAAGGCCATGTTGCATCCAGATGTTGAGGCACGTGTAGGCGCTCATATGATATTCTCCATTCTCCTTGCTGGAGCTCTAATCCATCCAAAATATGATTCAGAGTGTTTGCATGAATCTAAGAAATTGCATTTCAGAACTACGCCAGCATTTGCCTCAGCGAGTGCTCTGCTTGAAAAACTCCAAAGAGAATATGGAAATGGGATTAAGCGAGGAAATGCCACGCACAATGAAACTGGCATGAAAGAGATGAACAAAGGTGAAATGAAACATGGATGGATCCAGAAAAATTTACCATGTTTCCATAAATTAAGCTATTTAATCATTGACAGAACTGCCATTTCAAAGTACTCACGTGAAACAGAATCAACATTTTTTGTCCTGAATGAAGATCAAATAGGTCAGTTGCTTTCTGCATTTTGGAGGCAAGCATATCAGTCAGATAACTCACCATCAAATTATGAAGCTATTGCCATTTCATTTAATCTGATGGTACTTTCTTTTCATCTCAAGAATACAAACCAAAGCACCACTGCTCAGCTCTTTCAGTTTTTATTATCTCTTATAAACCTTTCATTGGACCCTAATGGAGCATTGCCTCCATCATCCAGAAGGTCAATTTTTACACTTTCAGTTGCTCTGTTGGCTTTTGCAGGAAAACTCTTTGAGATTCCTGACTTGATAGACTCTTTAAAGAATTTAATGACTTATTACGATGACCCATACCTAAGAGTAGGCGATGACTTTCTTTTGTATGTTATACCTCAATCCAACTTAAAAGTATATGGTTCTGAAGCTGATCAAGATGCATCCAAATTTTATTTGAATGAGTTGAAAAAAAGAATGACTGGATGTGGCCCTCACTTTAGTGATGTTATTGTACTGCACCTTTCCTTGTCAAGCGAGATGGATAAAAATGACTTGGCCAAGCTGCTTTCTACTACTTTTATGGCAGAGGATCCGGCTTGGACTTTATTGAATACTCTTCCATTCCTTGAATCGGATGCCGGCAGGACTCTTACAGCTTTTGAAGAGCCGTTCTCTTTTGATGAGGATAATTCAAGTTCAGTTGATGGAGAACTATCTGTAGAAGGTCCGTCTGCTGTTATTCCTAGATTGCATCCCTCAAATGATGAACCACCATCGATGCCTCAATTTATGAGTGTCGTGCAGCTTTTAGAATCGGCATTGCACGTTGCTGGTCAAGTGGCCGGCTCTTCAGTTTCAACGTCGCCACTTCCTTATGGTGCCATGGCCAGCCAGTGTGAGGCCTTCGGCATGAGCACCAGGAAGAAGCTCTCCACCTGGCTGGTTTCTCAGAATCCCATACAAGTCATCGATTCAGAATCTGAGAAGCTGCAGCAGGATACGGTGGTTGGCCAGCCCTGGCAGGCACTGAGGCTTCCTCCTGCAAGCCCCTTCGACAACTTTTTGAGAGCTGCTGGCTGTTAGGTTCTTTATTTCTCATCAAAAGCTTTCTATGTACTTATGTTAATTTGAGGGATTATGAAGATAGTTAATTAGTATAACCAAAATGTTAATTTGTTATTACTGCCTGATGCCTTAATGTCTGCATTTTCATCAACCACATTTTTCTTTTCAAAATTGCCATCCAATTCCACTACGCTCTGGTTTCTTTTTTCTAATCATTGTGTGCATGCTTTATAATGGTTGGAATTTGTGTTAATATATATGATGTTAAGTAGCAGGATTCGTATCTCTATACATCAGTGAAA

Network for GWHGAAEX018074

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX018074
MKSLLSFFKWSGQTFLAPPCPTTYIPAKLSFSRFKLLPATVVLETQTSMGFLPRKLSPACENLCLCCPALRPSSRRPVKRYRKLLSEIFPKNLDGIPNERKIIKLCEYAAKNPSRIPKVSRFLEQKFYKELQNEHFNGIKIIIEVYCKLLVICREQMAYFAWNLLSDVITLLEAKQLDCLRILGCQALTKFIYNQADGTYARCIDSIVSSVCRLARKEREKHNNLLKAASLQCLSSMVWFMSEYSYIFSDFDEIIYSILENHGNGERSKDDVGSEKHHNWVDEVIRCETRTGPVMHDDVSLKSMIIQPLPEIKDSTLLAREECENPKVWSEICIQKLAGLGKESTTMRRILDPMFCYFDRHKLWTPEVGLAQNVLWNLMCLSKISGNEQFILIALVRHLDNKDITHDPQLKSNIVQIATFLVKQLRLRSVVADIGVASNLCRHLRKSLHLTLEITKPDDASWNFLLQDSIENCLLEIVKGFADANPLYDMMAITLEKMANTAVARATIGSLLILVRLISLTSSLSHSELDFPEALLLQVLKAMLHPDVEARVGAHMIFSILLAGALIHPKYDSECLHESKKLHFRTTPAFASASALLEKLQREYGNGIKRGNATHNETGMKEMNKGEMKHGWIQKNLPCFHKLSYLIIDRTAISKYSRETESTFFVLNEDQIGQLLSAFWRQAYQSDNSPSNYEAIAISFNLMVLSFHLKNTNQSTTAQLFQFLLSLINLSLDPNGALPPSSRRSIFTLSVALLAFAGKLFEIPDLIDSLKNLMTYYDDPYLRVGDDFLLYVIPQSNLKVYGSEADQDASKFYLNELKKRMTGCGPHFSDVIVLHLSLSSEMDKNDLAKLLSTTFMAEDPAWTLLNTLPFLESDAGRTLTAFEEPFSFDEDNSSSVDGELSVEGPSAVIPRLHPSNDEPPSMPQFMSVVQLLESALHVAGQVAGSSVSTSPLPYGAMASQCEAFGMSTRKKLSTWLVSQNPIQVIDSESEKLQQDTVVGQPWQALRLPPASPFDNFLRAAGC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.340
SRP064423	SRR2545915	Juvenile tuber	52.730
SRP108465	SRR5643513	five period of Gastrodia elata	37.670
	SRR5643514	five period of Gastrodia elata	37.080
	SRR5643515	five period of Gastrodia elata	33.800
	SRR5643524	five period of Gastrodia elata	36.790
	SRR5643525	five period of Gastrodia elata	9.640
	SRR5643528	five period of Gastrodia elata	8.770
	SRR5643658	five period of Gastrodia elata	8.740
	SRR5643659	five period of Gastrodia elata	32.170
	SRR5643660	five period of Gastrodia elata	38.640
	SRR5643661	five period of Gastrodia elata	39.160
	SRR5643662	five period of Gastrodia elata	24.390
	SRR5643663	five period of Gastrodia elata	22.740
	SRR5643664	five period of Gastrodia elata	20.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.380
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.950
SRP279888	Gastro	Gastrodia elata tuber	33.56
	Juven	Juvenile tuber	59.76
	Mother_Gastro	Mother tuber of Gastrodia elata	33.43
	Mother_Juven	Mother tuber of Juvenile	47.67