Detail information of GWHGAAEX018077/evm.TU.scaffold_9.81


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG04282.00E-126Non-canonical ubiquitin conjugating enzyme 1
nrgi|743844146|ref|XP_010938255.1|4.00E-139PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Elaeis guineensis]
Swissprottr|Q9LSP7|UBC32_ARATH5.00E-127Ubiquitin-conjugating enzyme E2 32
trEMBLtr|B9HIP6|B9HIP6_POPTR6.00E-131Ubiquitin-conjugating enzyme family protein {ECO:0000313|EMBL:EEE89702.1}
TAIRAT3G170002.00E-126ubiquitin-conjugating enzyme 32

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000158682095882264-
Transcript Sequence

Network for GWHGAAEX018077

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con151221.80E-19
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10578UBE2J1, NCUBE1, UBC6 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms54.950
SRR2545915Juvenile tuber58.150
SRP108465SRR5643513five period of Gastrodia elata80.410
SRR5643514five period of Gastrodia elata82.520
SRR5643515five period of Gastrodia elata84.230
SRR5643524five period of Gastrodia elata82.860
SRR5643525five period of Gastrodia elata153.090
SRR5643528five period of Gastrodia elata136.110
SRR5643658five period of Gastrodia elata151.520
SRR5643659five period of Gastrodia elata94.130
SRR5643660five period of Gastrodia elata88.690
SRR5643661five period of Gastrodia elata96.260
SRR5643662five period of Gastrodia elata101.110
SRR5643663five period of Gastrodia elata93.170
SRR5643664five period of Gastrodia elata104.930
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_168.060
SRR6049655Rhizomagastrodiae_C368-T10_good_180.050
SRR6049656Rhizomagastrodiae_C368-T07_good_170.300
SRR6049657Rhizomagastrodiae_C368-T07_good_162.840
SRR6049658Rhizomagastrodiae_C368-T04_good_170.940
SRR6049659Rhizomagastrodiae_C368-T04_good_162.000
SRR6049660Rhizomagastrodiae_C368-T01_good_157.110
SRR6049661Rhizomagastrodiae_C368-T04_good_153.020
SRR6049662Rhizomagastrodiae_C368-T01_good_169.610
SRR6049663Rhizomagastrodiae_C368-T01_good_165.670
SRR6049664Rhizomagastrodiae_C368-T10_good_188.750
SRR6049665Rhizomagastrodiae_C368-T10_good_188.750
SRP279888GastroGastrodia elata tuber 82.65
JuvenJuvenile tuber111.77
Mother_GastroMother tuber of Gastrodia elata 139.90
Mother_JuvenMother tuber of Juvenile 167.65