Detail information of GWHGAAEX018084/evm.TU.scaffold_9.102
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383788015|ref|YP_005472583.1| | 2.00E-08 | putative cold shock protein [Caldisericum exile AZM16c01] |
| KOG | KOG3070 | 6.00E-41 | Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing |
| nr | gi|15233440|ref|NP_195326.1| | 3.79E-39 | cold shock protein 1 [Arabidopsis thaliana] |
| Swissprot | tr|O65639|CSP1_ARATH | 2.00E-41 | Cold shock protein 1 |
| trEMBL | tr|R0F899|R0F899_9BRAS | 2.00E-40 | Uncharacterized protein {ECO:0000313|EMBL:EOA17846.1} |
| TAIR | AT4G36020 | 6.00E-41 | cold shock domain protein 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000001 | 7246664 | 7248106 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018084
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00313.21 | CSD | 8 | 70 | 2.40E-10 |
| PF00098.22 | zf-CCHC | 125 | 141 | 2.60E-07 |
| PF00098.22 | zf-CCHC | 161 | 178 | 1.80E-06 |
| PF00098.22 | zf-CCHC | 199 | 215 | 8.10E-08 |
| PF00098.22 | zf-CCHC | 231 | 246 | 1.70E-07 |
| PF00098.22 | zf-CCHC | 258 | 274 | 3.30E-08 |
| PF00098.22 | zf-CCHC | 292 | 309 | 3.70E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CSD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.120 |
| SRR2545915 | Juvenile tuber | 3.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.050 |
| SRR5643514 | five period of Gastrodia elata | 5.370 | |
| SRR5643515 | five period of Gastrodia elata | 5.880 | |
| SRR5643524 | five period of Gastrodia elata | 4.440 | |
| SRR5643525 | five period of Gastrodia elata | 9.200 | |
| SRR5643528 | five period of Gastrodia elata | 4.970 | |
| SRR5643658 | five period of Gastrodia elata | 7.770 | |
| SRR5643659 | five period of Gastrodia elata | 6.800 | |
| SRR5643660 | five period of Gastrodia elata | 5.050 | |
| SRR5643661 | five period of Gastrodia elata | 7.540 | |
| SRR5643662 | five period of Gastrodia elata | 6.740 | |
| SRR5643663 | five period of Gastrodia elata | 6.490 | |
| SRR5643664 | five period of Gastrodia elata | 5.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.37 |
| Juven | Juvenile tuber | 16.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.31 | |
| Mother_Juven | Mother tuber of Juvenile | 8.68 |