Gene detail

Detail information of GWHGAAEX018089/evm.TU.scaffold_9.116

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521460611\|ref\|YP_008147286.1\|	2.00E-105	carboxyvinyl-carboxyphosphonate phosphorylmutase [Sorangium cellulosum So0157-2]
KOG	KOG1260	1.00E-123	Isocitrate lyase
nr	gi\|672164935\|ref\|XP_008802359.1\|	0	PREDICTED: petal death protein [Phoenix dactylifera]
Swissprot	tr\|O49290\|CPPM_ARATH	8.00E-60	Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic (Precursor)
trEMBL	tr\|A0A061EKM8\|A0A061EKM8_THECC	0	Phosphoenolpyruvate carboxylase family protein isoform 4 {ECO:0000313\|EMBL:EOY04947.1}
TAIR	AT2G43180	1.00E-123	Phosphoenolpyruvate carboxylase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000001	8129806	8194044	+

Transcript Sequence
>GWHTAAEX018089 AATGCTAACAAATGTGAGAATCGTTAGCAGGTCTACTTACAGTCCTCACTTCGGCCATTCTCTTCTCTTTCCGGATAGTTCCACCATTTGCTAAAGAACAACCCGATCCTTTTCGAGATTCCGAAGAATGCCTAGCAATCACGGAGCTCGCGCAGCCTCCCGCAAAACGCCGGCGCAGGCATTTCGACGTCTTTTGGAGTCAACTGGAACTCATCAAGGTCCCATCTGCCACGATGCTTTGAGCGCTAAGCTCGTAGAACGTGTAGGCTTCCCGTTCACCTTCATGGGTGGATTTGCCGTTTCATCGACTAGGTTGGGTTTGCCAGATGTGGGGCTTATTTCCTATGGAGAAATGCTTGATCAAGGATTCTTGATCACACAAGCAGTTTCAATTCCTGTGATTGGAGATGGAGACACTGGGTATGGGTCCCCTATGAATGTCAAGAGAACAGTTAAAGGCTTCATTAAAGCAGGATTTGCAGGGATCCTTCTTGAAGACCAGCTTTCACCAAAAGCTTGTGGACATACACGTGGAAGGAAAGTTGTTTCCAGGGAAGAGGCGGTTATGAGAATTAGAGCAGCAATTGATGCTCGAAATGAAAGCGATTCTGATTTTGTCATCATAGCACGAACTGATGCCCGTCAAGCTATGTCTTTAGAGGAAGCATTGTGGCGGTCAAGAGCCTTTGCTGATGTTGGAGCAGATGCCATTTTCGTTGATGCACTTGCTTCTATAGAGGAGATGAAGGCGTTCTGCCAGATAGCACCTTCAGTTCCGAAAATGGCCAACATGCTGGAGGGTGGAGGAAAAACACCATTGTTGAGCCCAACCGAACTTCAAGAGATAGGATATAAGTTTGTGGTTTATCCGTTATCTCTGTTTGGGGTATCAATCCGAGCCATGCAGGAAGCACTAACTGCGTTAAGAGATGGTCGTATTCCCTCACCAGAAATCTTACCATCATTCGAAGATATAAAAGAAATAGTTGGTTTTAACGAGTATTATGAAGAGGAGGAACAGTACAAGATCAGCGAACCTGTTGCTGAGGCTGATTCTAAGGAGCGCTCATCTGATGAGATTAGCTCTCAAACTCTGAGATTAAAACTCACAGAGAACAATGGGCATGAGAAGCTTGATGCCCGGATTTCGGTGGGGTTCTTAGAAGGGATGTCTAGCATGATTTCAGGCATGGATGCAATAAAAAATGTGATGGAAGTGCTGAAAAACGCGTCATTGGAAGGCATGCCTGAGAAAGGGAAATTGCTTGCGGATTTCTATGCCACCACGGGCGACAGGATTCAGGTTTTTGTGGAATGAGCCTCCTCTCATTTGTTCTCTCCCGAACCCTGTTTTTTATGTTTATTGGTGTCATTTAGGGTGTAGGTTTATGGACTGGAGATTTCGCCTATAAAATTTTAAACTATAGCATGTTGATTGATGTATTTTTGTGTCATTTGGGTGATTTAACACATTCTTCTTAAAGAAGTTTCTGTGTGTGATTGTGGTAAGCAATGAATAAGAAATCATTTCTGACCCTCATCTAAGTTGGACTAGACATGTTTGCTTCGCTCATTAAGTTGTTCACACCCAAAGCATTTGGGATGAATTCCTTAAGCGAAAGCATTGAGTGTCGATCTCCGGTTAGAATTGTGTCCAGTTGATATTAACCAAATTCATTCATGCTATCAGCGTCATCATCAGCCGACCGAGGAACCTCGAGGCCCGACGGACTATCTAGCCCATTGTCCTCCCACAATTTGCAGCAATTCCTGAGCATGACGCCTATAATAGTCCAATCCACGAAGAAATTCCTAAAACAAATTGTCATCAAAGACAGTTCCGGCAGTTGAACACAAGAATGCCTAATAAAGTAAATTTGTTATCAACATTTTTATTATTTCATAAGAATATCATCCAATTTAATATGCTATTTTTATAAATATTAAGATTTTAGTGTTAAATGTGTAACTATAGAAGTTTCGAGTAACATATGTACCTTTTA

Network for GWHGAAEX018089

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13714.5	PEP_mutase	27	265	6.80E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	146.640
SRP064423	SRR2545915	Juvenile tuber	136.400
SRP108465	SRR5643513	five period of Gastrodia elata	17.070
	SRR5643514	five period of Gastrodia elata	15.170
	SRR5643515	five period of Gastrodia elata	17.420
	SRR5643524	five period of Gastrodia elata	12.440
	SRR5643525	five period of Gastrodia elata	9.270
	SRR5643528	five period of Gastrodia elata	6.340
	SRR5643658	five period of Gastrodia elata	8.660
	SRR5643659	five period of Gastrodia elata	40.020
	SRR5643660	five period of Gastrodia elata	38.100
	SRR5643661	five period of Gastrodia elata	42.110
	SRR5643662	five period of Gastrodia elata	54.270
	SRR5643663	five period of Gastrodia elata	46.060
	SRR5643664	five period of Gastrodia elata	58.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	72.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	71.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	64.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.240
SRP279888	Gastro	Gastrodia elata tuber	44.74
	Juven	Juvenile tuber	20.30
	Mother_Gastro	Mother tuber of Gastrodia elata	7.65
	Mother_Juven	Mother tuber of Juvenile	10.28