Detail information of GWHGAAEX018100/evm.TU.scaffold_9.147
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0862 | 7.00E-143 | Synaptobrevin/VAMP-like protein SEC22 |
| nr | gi|743805363|ref|XP_010927421.1| | 8.64E-148 | PREDICTED: LOW QUALITY PROTEIN: 25.3 kDa vesicle transport protein-like [Elaeis guineensis] |
| Swissprot | tr|Q94AU2|SEC22_ARATH | 2.00E-143 | 25.3 kDa vesicle transport protein |
| trEMBL | tr|M0TBD8|M0TBD8_MUSAM | 4.00E-148 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P29930_001} |
| TAIR | AT1G11890 | 7.00E-143 | Synaptobrevin family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000001 | 9326938 | 9372188 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018100
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13774.5 | Longin | 36 | 118 | 1.40E-23 |
| PF00957.20 | Synaptobrevin | 133 | 213 | 1.50E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08517 | SEC22 | SNARE interactions in vesicular transport | map04130 |
| Phagosome | map04145 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 150.350 |
| SRR2545915 | Juvenile tuber | 127.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 79.810 |
| SRR5643514 | five period of Gastrodia elata | 74.650 | |
| SRR5643515 | five period of Gastrodia elata | 71.710 | |
| SRR5643524 | five period of Gastrodia elata | 71.840 | |
| SRR5643525 | five period of Gastrodia elata | 103.310 | |
| SRR5643528 | five period of Gastrodia elata | 99.110 | |
| SRR5643658 | five period of Gastrodia elata | 103.440 | |
| SRR5643659 | five period of Gastrodia elata | 81.750 | |
| SRR5643660 | five period of Gastrodia elata | 93.240 | |
| SRR5643661 | five period of Gastrodia elata | 84.420 | |
| SRR5643662 | five period of Gastrodia elata | 78.450 | |
| SRR5643663 | five period of Gastrodia elata | 77.430 | |
| SRR5643664 | five period of Gastrodia elata | 79.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 93.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 93.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 90.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 115.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 110.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 135.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 104.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 99.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 88.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 91.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 89.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 89.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 123.92 |
| Juven | Juvenile tuber | 113.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 94.89 | |
| Mother_Juven | Mother tuber of Juvenile | 102.37 |