Detail information of GWHGAAEX018102/evm.TU.scaffold_9.149


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41970FOG: PPR repeat
nrgi|672112774|ref|XP_008807561.1|0PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Phoenix dactylifera]
Swissprottr|Q9ZUU3|PP190_ARATH0Pentatricopeptide repeat-containing protein At2g37230
trEMBLtr|B5RHT1|B5RHT1_MUSBA0Pentatricopeptide (PPR) repeat-containing protein {ECO:0000313|EMBL:BAG70980.1}
TAIRAT2G372300Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000194147349416929-
Transcript Sequence

Network for GWHGAAEX018102

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1621890.062
PF13041.5PPR_21932407.40E-11
PF13041.5PPR_22633086.40E-13
PF17177.3PPR_long3144302.00E-06
PF01535.19PPR4504790.71
PF13041.5PPR_24815286.30E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.580
SRR2545915Juvenile tuber31.050
SRP108465SRR5643513five period of Gastrodia elata26.430
SRR5643514five period of Gastrodia elata24.130
SRR5643515five period of Gastrodia elata21.300
SRR5643524five period of Gastrodia elata22.350
SRR5643525five period of Gastrodia elata25.310
SRR5643528five period of Gastrodia elata20.750
SRR5643658five period of Gastrodia elata23.240
SRR5643659five period of Gastrodia elata39.780
SRR5643660five period of Gastrodia elata39.970
SRR5643661five period of Gastrodia elata34.460
SRR5643662five period of Gastrodia elata45.670
SRR5643663five period of Gastrodia elata37.450
SRR5643664five period of Gastrodia elata43.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.470
SRR6049655Rhizomagastrodiae_C368-T10_good_136.000
SRR6049656Rhizomagastrodiae_C368-T07_good_133.490
SRR6049657Rhizomagastrodiae_C368-T07_good_135.660
SRR6049658Rhizomagastrodiae_C368-T04_good_132.400
SRR6049659Rhizomagastrodiae_C368-T04_good_137.680
SRR6049660Rhizomagastrodiae_C368-T01_good_139.620
SRR6049661Rhizomagastrodiae_C368-T04_good_134.200
SRR6049662Rhizomagastrodiae_C368-T01_good_135.050
SRR6049663Rhizomagastrodiae_C368-T01_good_138.690
SRR6049664Rhizomagastrodiae_C368-T10_good_129.170
SRR6049665Rhizomagastrodiae_C368-T10_good_129.170
SRP279888GastroGastrodia elata tuber 32.77
JuvenJuvenile tuber32.00
Mother_GastroMother tuber of Gastrodia elata 18.50
Mother_JuvenMother tuber of Juvenile 23.98