Gene detail

Detail information of GWHGAAEX018106/evm.TU.scaffold_9.154_evm.TU.scaffold_9.153

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2369	Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase
nr	gi\|743853704\|ref\|XP_010940720.1\|	PREDICTED: phospholipid--sterol O-acyltransferase isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q4VCM1\|LCAT2_ARATH	Phospholipid--sterol O-acyltransferase
trEMBL	tr\|A0A068U5F1\|A0A068U5F1_COFCA	Coffea canephora
TAIR	AT1G04010	phospholipid sterol acyl transferase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000001	9664908	9821098	+

Transcript Sequence
>GWHTAAEX018106 TAATTTTTTTTTACTAAGGAGTATAACCACTTGTAGTTACTTTTAGGCATATGAGTAATTTACTTTTTCATTTGTTCAGTTGTGTAACAACAAAATAAATTATCGTTGATGGCATCAGCCCTGCAAGGATTGCCGCCTCCCGCTTCTAGAAATCAAACTTCCTCCCAGTTTACCATTTTGCTCCATCGGTGAAGTCATTATCTGAGCGGGCGATTCAATGCGCGCACGGCTTGCCATTGCCTTTGGGCGGCGGGAGGGAGGAATACTACTCGAAGCTCTCGGGGATCATCATTCCGGGTTTTGCCTCGACGCAGCTGAGGGCGTGGTCAGTGCTTGATTGCCCCTTTTCACCGCTCGACTTCAACCCTCTTGACTTGGTCTGGCTCGACACCACCAAGGTTCTATCTGCAGTAAATTGCTGGCTCAAATGCATGCTGTTGAACCCTTATAATCAAACCGATCATCCTGAGTGCAAATCGAGGCCTGATAGTGGCCTATCAGCTATAACAGAGCTGGATCCAGGTTACATAACAGGCCCACTTTCTTCTGTATGGAAGGAATGGCTGAAATGGTGCATTGAATTTGGTATTGATGCGAATGCAATTATCGCTGTTCCGTATGACTGGAGACTATCAGCATCAATGCTGGAGGAGCGAGACCTTTACTTTTACAAATTAAAGTTAACTTTTGAAACAGCTTTAAAACTTCGTGGGGGACCCTCTTTGGTTTTTGCACACTCACTTGGAAATAATGTTTTTCGCTATTTTTTGGAGTGGTTGAAACTTGAAATTGCTCCAAAGCATTATATACATTGGCTCGATGAACACATTCATGCATATTTTGCAGTTGGTGCACCTCTTCTAGGCGCTACAGAAACAGTAAAAGCTACGTTATCTGGATTCACATTCGGCCTTCCAATTGCTGAGGGAACTGCCAGACTGTTATACAATTCATTTGGTTCTTCTCTTTGGTCTATGCCATTCTCAAAATACTGCAAAGCAGATAATGATTATTGGAAACATTTCATTGATGGAAGGGGAGGTCAAAAGTACTCACTTCAATGTGATGACATTGAGTTTCGATTGAACTACTCCAGTTGGCCCACAGATGTCATAAACATCGAGATTCCTTCCATTAGAGGCAGTGATGCCTATCCATCAATGCCAGGAGGTTCACAGGCTGTGGCTGCAAACCTGGAATGTGGAAGACCCGTTCAGCTAGGCTTTTCTGCTAGGGAAATTTCTGATGGTACTTTCTTCAAAGCAATAGAAGACTTTGACCAAGATAGTGAAAAGCTCTTGTATCATCTCAGGACATATTATCAAGGTGATCCAGTATTGAATCCCCTAACACCGTGGGATAGGCCTCCATTAAAGAACATTTTCTGCATATATGGGATTGATATGAAGACTGAGGTCGGATACTATTTTGCTCCCAGTGGTAAACCATACCCTGATAATTGGATTGAAACAGATGTTGTTTATGAACATGAAGGAACATTATTTTCAAGGTCTGGTAATTCCGTTAGAGGAAACCCCGGAGTGTCTAGTGGTGATGAAACAGTGCCCTACCACTCCCTCTCCTGGTGCAAAACTTGGCTAGGATCTAAAGTGAACATTACTAGGGCTCCGCAGTTGGAGCATGATGGGTCGGACTTACAAGTGAAACTGAATAGACACCATACTCATGGTGAAGATATAATTCCAAACATGTCCAGAAGAGCTCGTGTAAAATATATCACATACTATGAGGACTCTGAAAACATTCCAGGAAGGAGAACAGCTGTTTGGGAAATTGATAAAGCGAACCACAGGAACATTGTTAGGTCGCCAGTGTTAATGCGCGAGTTGTGGCTTCAGATGTGGCATGACGTCCATCCTGATGCAAAATCAAACTTTGTAACTAAAGCAAAGCGTGGGCCGCTTAGAGACGTCGACTGTTACTGGGATTACGGAAAAGCCCGATGCGCTTGGCCAGAATATTGTGAATACAGGTATGTTTTTGGAGACGTACATCTCGGGCAGAGCTGCAGGCTGAAGAACTCTTCGTCAGATCTCCTATTACACTATCTATAATGTAAGCTTATATTCTGGCTATTTTTAAGGATAAACTTACATTTTTACGGGATGATCATAAATTAGTCCAAGATTTGAACTGGTGATCCAGGCTGCTTTTGGGCAGCTTTTTTTAGTATCTGCACTTTATATAATAAAATTCAACCCTATTATATAAGCAGCCCCTCAAAATGCAATTAGCTC

Network for GWHGAAEX018106

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02450.14	LCAT	1	417	1.70E-108

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006629	Biological Process	lipid metabolic process
GO:0008374	Molecular Function	O-acyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.160
SRP064423	SRR2545915	Juvenile tuber	8.570
SRP108465	SRR5643513	five period of Gastrodia elata	5.400
	SRR5643514	five period of Gastrodia elata	4.670
	SRR5643515	five period of Gastrodia elata	3.880
	SRR5643524	five period of Gastrodia elata	5.320
	SRR5643525	five period of Gastrodia elata	4.010
	SRR5643528	five period of Gastrodia elata	5.760
	SRR5643658	five period of Gastrodia elata	3.370
	SRR5643659	five period of Gastrodia elata	6.230
	SRR5643660	five period of Gastrodia elata	8.940
	SRR5643661	five period of Gastrodia elata	6.280
	SRR5643662	five period of Gastrodia elata	7.700
	SRR5643663	five period of Gastrodia elata	6.470
	SRR5643664	five period of Gastrodia elata	7.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.450
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.580
SRP279888	Gastro	Gastrodia elata tuber	8.38
	Juven	Juvenile tuber	9.60
	Mother_Gastro	Mother tuber of Gastrodia elata	8.32
	Mother_Juven	Mother tuber of Juvenile	7.85