Gene detail

Detail information of GWHGAAEX018113/evm.TU.scaffold_9.172

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1032	0	Uncharacterized conserved protein, contains GRAM domain
nr	gi\|743762591\|ref\|XP_010908904.1\|	0	PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Elaeis guineensis]
Swissprot	tr\|Q9ZVT9\|C2GR1_ARATH	8.00E-19	C2 and GRAM domain-containing protein At1g03370
trEMBL	tr\|V4U1J1\|V4U1J1_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR56026.1}
TAIR	AT3G59660	0	C2 domain-containing protein / GRAM domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000001	10656440	10730201	+

Transcript Sequence
>GWHTAAEX018113 CCCTCGTAACTAACTCGGTTAAAGTTTGACCACAATTGCTCCCCGCCTCTCCCTCTTCCTTTCAGTCGTTTTCATGGCTTACGGTTCCAGTTTTCCCCGTGTGCTTCTGCGCGAGTATCCTTAGATCCTGTCTCTCCTTGGATACCCTAGTTGGGCGGTCTCGTTTTCATGGCGGTGTTCTCGCTTGCCCTGCTCCTCCCGTCATGGTGGGAAATCGAAGTTACTTTTGCCGCTGCACTATTGGTGATCACCGTATACACGTTCTTCGAGAAGATTGCTAGGGGCCTTAGTGTTGGTTTTGGAGGAGGAATTGGAAAAGAAGACGACCGGGCTTCTGGCGGCGATGAGACGGCGATTGCCAAAGACCAGCTCCTCCCTAGGGAGTCTGATGACAAGGAGAAGATGAGCCAGTTGAAAGGGGATTCTAATTCTTCATATGTGATTAAGCTGGAACTTTTGGCTGCAAAGAACCTAATTGGTGCAAATTTGAATGGAACTTCTGACCCATATGCAATAATTACATGCGGTGATCAAAAGCGATTTAGTTCAATGGTTCCTGGATCAAGAAATCCAATGTGGGGTGAAGAGTTCAACTTTTTTGTTGATGCACTTCCTGTTCAGATTAATGTTACAATATATGACTGGGACATAGTATGGAAAAGCACTGTACTTGGGTCTGTTACTATTCCTATTGAAAATGAAGGCCAAACTGCAGCTATCTGGTATTCACTGGATAGCACTTCGGGACAGGTTTGCCTTCATGCTAAAACACTGAAACTTTCCGTAACTTCTGTCAGGGCTTTGAATGGATTTGCCGGGGCTGATGCTCGTAGGCTGATGTCTTCAGAACAAGGACCTACTGTGGTTCATCAAAAGCCAGGTCCTCTACAAACCATATTCGATCTTCTTCCAGACGAGGCTGTTGAACATAGTTATTCTTGTGCACTTGAAAGATCCTTTTTGTATCATGGGCGAATGTATGTTTCTTCATGGCATGTTTGCTTCCATTCTAATGTATTTTCTAAGCAAATTAAGGTCGTTATTCCTATTGGAGACATCCATGAGATAAAGAGAAGCCAACATGCATATATCAATCCAGCAATAAAAATAATTCTTCGCATGGGATCTGGCGGTCATGGAGTGCCTCCTTTAGGAAGTCCTGATGGGAGAGTGAGCTACAAGTTTGCTTCTTTTTGGAACCGGAATCATTCTTTCCGAGCCCTACAACGTGCTGCTAAGAATTATCGGGCAATGTTGGAAGCTGAGAAGAAGGAGAATGCTCAATCAGCATTGCGTGCTCACAGCAGCTCAATGAGAGGTAGTCGAAGGCGAATGGATATAACTGAAGAAAATGTAGCTGCGACTGGAACTTTTCAGGATTTCATCAAAGAAAATGTTCTAGCTGGCATATTTAATGATACTTTTCCATGTACCGCTGAGGAGTTTTTCACTTTGTTGTTCAGCGATGATTCAACGTTTATTGATGAGTATCGATCAGCTAGAAAGGACACAAACCTTAACATGGGACAATGGCATGTTGCTGATGAATATAATGGCCAGGTTCGAGATATGACGTTTCGATCAATTTGTCATAGTCCCATGTGTCCTCCAGACACTGCCATGACTGAGTGGCAACATGCTGTTCTTTCTGCTGATAAGACTACTCTGATTCTTGAAACTGTGCAGCAGGCACACGATGTTCCTTTTGGGTCTTGCTTTGAGATACACTGTAGGTGGACGTTGAAAACTACTTCAGACTCTTCATCTACAATAGAAATAAAAGTTGGTGCCCATTTCAAGAAATGGTGTATCATGCAATCTAAGATTAAAACAGGAGCAGTTGACGAGTATAAAAAGGAAGTTGAGCTCATGCTGGATGTCGCCCGATCGTATCTCACTAAATCCAAAGGATCCAACCAAGAGATGGTTGAGGCATCATTATCTACCCTGCCACAATCTCAGTCATTATAGAAAAGATGCGAAGCTGCGATCTATTTCCTGCATTGCTAGCCGACACTTTGCGTTGAAGAGCAGTGGTGCGGTGTGGCGTGTGATGCTCATAGTTTATCCATACTGGTAGTTTTTCCATAGTCTTTTGTATTTTTCTTCTTGTATTTATATATATTTTTTCTTCAACCCTAATTATTCTACCTGTTTATCACTGAAAGCACAGCTTAAGTGATTATTTTTTCTTGCACAGTTCTGTTAATTATGGTTCTGTTTATTATTTTTTTGTGTAGTAAAAATAAATGTATGGTTCCACTTCTATTCTCTTGCTGTAATTGAATATTGTCGTTCATCAATATATCAGTGTTTGCTCTTTTACGCA

Network for GWHGAAEX018113

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.29	C2	92	188	7.40E-16
PF02893.19	GRAM	241	314	9.60E-15
PF16016.4	DUF4782	414	559	9.20E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.010
SRP064423	SRR2545915	Juvenile tuber	16.970
SRP108465	SRR5643513	five period of Gastrodia elata	9.570
	SRR5643514	five period of Gastrodia elata	9.200
	SRR5643515	five period of Gastrodia elata	9.520
	SRR5643524	five period of Gastrodia elata	10.420
	SRR5643525	five period of Gastrodia elata	14.860
	SRR5643528	five period of Gastrodia elata	18.830
	SRR5643658	five period of Gastrodia elata	18.640
	SRR5643659	five period of Gastrodia elata	9.830
	SRR5643660	five period of Gastrodia elata	10.180
	SRR5643661	five period of Gastrodia elata	9.960
	SRR5643662	five period of Gastrodia elata	10.330
	SRR5643663	five period of Gastrodia elata	10.610
	SRR5643664	five period of Gastrodia elata	11.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.580
SRP279888	Gastro	Gastrodia elata tuber	12.87
	Juven	Juvenile tuber	14.65
	Mother_Gastro	Mother tuber of Gastrodia elata	29.08
	Mother_Juven	Mother tuber of Juvenile	35.46