Detail information of GWHGAAEX018121/evm.TU.scaffold_9.187
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1374 | 0 | Gamma tubulin |
| nr | gi|721751153|gb|AIX10968.1| | 0 | tubulin [Ornithogalum saundersiae] |
| Swissprot | tr|O49068|TBG2_ORYSJ | 0 | Tubulin gamma-2 chain |
| trEMBL | tr|I1HLK8|I1HLK8_BRADI | 0 | Tubulin gamma chain {ECO:0000256|RuleBase:RU003506} |
| TAIR | AT5G05620 | 0 | gamma-tubulin complex protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000001 | 11284131 | 11318420 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018121
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00091.24 | Tubulin | 4 | 214 | 8.10E-72 |
| PF03953.16 | Tubulin_C | 264 | 390 | 7.80E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0031122 | Biological Process | cytoplasmic microtubule organization |
| GO:0007020 | Biological Process | microtubule nucleation |
| GO:0007017 | Biological Process | microtubule-based process |
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
| GO:0005874 | Cellular Component | microtubule |
| GO:0000930 | Cellular Component | gamma-tubulin complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.700 |
| SRR2545915 | Juvenile tuber | 24.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.630 |
| SRR5643514 | five period of Gastrodia elata | 22.120 | |
| SRR5643515 | five period of Gastrodia elata | 18.700 | |
| SRR5643524 | five period of Gastrodia elata | 20.340 | |
| SRR5643525 | five period of Gastrodia elata | 7.210 | |
| SRR5643528 | five period of Gastrodia elata | 7.130 | |
| SRR5643658 | five period of Gastrodia elata | 6.670 | |
| SRR5643659 | five period of Gastrodia elata | 12.270 | |
| SRR5643660 | five period of Gastrodia elata | 13.270 | |
| SRR5643661 | five period of Gastrodia elata | 11.550 | |
| SRR5643662 | five period of Gastrodia elata | 13.170 | |
| SRR5643663 | five period of Gastrodia elata | 10.210 | |
| SRR5643664 | five period of Gastrodia elata | 12.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.93 |
| Juven | Juvenile tuber | 23.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.26 | |
| Mother_Juven | Mother tuber of Juvenile | 22.48 |