Gene detail

Detail information of GWHGAAEX018122/evm.TU.scaffold_9.188

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|474933615\|ref\|YP_007687197.1\|	3.00E-69	AAA family ATPase, CDC48 subfamily [Thermoplasmatales archaeon BRNA1]
KOG	KOG0732	0	AAA+-type ATPase containing the bromodomain
nr	gi\|695063292\|ref\|XP_009420143.1\|	0	PREDICTED: ATPase family AAA domain-containing protein At1g05910-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|F4IAE9\|Y1591_ARATH	0	ATPase family AAA domain-containing protein At1g05910
trEMBL	tr\|U5DD63\|U5DD63_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN20150.1}
TAIR	AT1G05910	0	cell division cycle protein 48-related / CDC48-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000001	11415480	11461296	+

Transcript Sequence
>GWHTAAEX018122 ATCACGTGATCCCAGGCAGGGTTTTCTCGAGCCATTTAGAGCGAGAGCCCGTCGCTTCGAAGCAGAGCTCTGTTGCTCCCTCCTCTCTTCCAGACTCTCCGCCCTCTCTTGCTTTCCTGTCTCGAAGCCGCCTCCTTTCCTTCTCTGAGTGTGATTCTGCCAAGCTTGTCAATGGCGAATTTCTAGGAACTCTTACCGCGGGAATTCCTCATAGGCGCGTTGGGATAAAGGATCTTCCGCTGAACGCGATAACTAGAGGTGGATGGATTCAAAGAGGGACGGACCTGCGTTGAGGCCGTTGAGGACTAGCGATCGGCTGCGGCAGCGGCGCAAAATGTTTGGCCACGGGACTTTTTTATACTACAAACCTGTGATTCGGAAGAAGAACAAGTCTAAAAGGAGGACTGCAGCTTCGCAGATTGCAAAGATGCTGCGGCCCAGAAATCGGCCAGCACGGGTGACTCATTTAGATCCTGTTGTTAAAAATCTTCGCCGTTCTACAAGAACAAGAAAGCTTTCTATCAATCTGGAGGATTATGAAACTGACAGTTCCAGAACAGATGACGACTTAATGGCTCCCAAGTATCATTCTTCTAGAAGAAAGGTTGAGAGTAATGTTAGCCCTGATGAACTTTCCATGTCCCCTAGGGATAGGAAGATTATAAACTCAAAGAGTCTTTCACAACATGGCAAAGCCAGCCATAATGAATTGTCTACTTACCCTAGGAGTAGGAGGATTATAAATTCTGTAAATCTTCCACGACGCGAAGGCTTACGGCCAAGGAAATCTGTTGGAGGATCAGCTGTTAAGTCATACCGACAATTTGTAGATGAAAATGAAAGTTCTGAAGAACAGGATGAACAGGAAGAACAGGAAGATCCGGAAGAACAGGATGAGCCCGAAGAACAGGAAGAACATGATGAAGCGGAAAATGGAAATGCTATTGTGGATGATGAGGCAGACGAAGCAGATGGGGATGCAGGTGATGAGGTAGAAGTAGATGAAGATGATGAAGATGGTGAAGAACAGGATGGGAGACGGAGATATGATTTGCGAAATCGTTCAGAGGTTCGAAGATCCACTTTTGACAAGGAAGGAAAGCAGATGCCCCGCAGGATACTGCATCATGGAATGGGTACCAAAAATAGTAAGGATACCAGGAAAGGGGGGTCTCGAGTTCACAAAAAGCATCGATTTTCAAGAATAGATGATTCTGATGATTCTCTTCTAGTGGATGAGCTAGATGAAGGTCCATCTATTCCGTGGGCGCGGAGTGGAAAAAATGGAGCTCCGTGGCTTTTTGGTGGTCTAGATATGCATGGAGCATCTGCATGGGGACTGAATATTGCAGCATCTGGTTGGTCCCATCAAGGTGACCCAATGGCTTCTCTTTGTTCAGGTGTTCAAACTGCTGGGCCAAGCTCAAAAGGAGGGGCAGATATTCAACCTTTGCAGCTTGATGAGAGTATTAGTTTTGATGATATTGGAGGCCTGTCAGAATACATTGATGCACTGAAAGAAATGGTTTTCTTCCCATTACTTTATCCAGATTTCTTTGCAAACTATAATATTTCTCCCCCAAGAGGAGTTTTGCTTTGTGGCCCTCCTGGAACTGGTAAAACATTGATTGCTAGGGCGCTAGCTTGTGCGGCTTCAAAGGCTGGCCAAAAAGTTAGTTTTTATATGCGTAAGGGAGCTGATGTTCTAAGCAAATGGGTTGGGGAAGCAGAGAGGCAGCTGAAGTTACTTTTTGAGGAAGCTCAAAAAAATCAGCCATCAATTATTTTTTTTGATGAAATTGATGGCCTTGCACCAGTTAGGTCTAGCAAGCAGGAACAGATTCACAATTCTATTGTTTCAACTCTACTTGCTTTAATGGATGGTCTTGATTCACGTGGACAAGTTGTTTTGATAGGGGCAACTAATAGGATTGATGCCATTGATGGGGCACTCCGTCGTCCTGGTAGATTTGATCGAGAGTTCAATTTTCCTCTTCCTGGCTATAAGGCGCGTGCAGAAATATTGAACATTCATACACGTAAATGGAAGGAACCTCCTTCAGAAGAGTTAAAAGGGGAACTTGCAGCCAGCTGTGTAGGATATTGTGGGGCTGATTTGAAAGCCTTATGCACAGAAGCAGCCATCAGGGCTTTCCGTGAAAAATACCCCCAAGTTTACAATAGCGATGACAAGTTCGTCATAGATGTCAATTCTATTAATGTGCAAAAATTTCATTTTTTGGAAGCTATGTCTACCATAACTCCTGCTGCTCATAGGGGTTCAATCGTGCATTCAAGACCACTGTCTCCAATTGTTTGTTCACTTTTACAAAGACATCTCCAGGGAATTATGAAACATATAGCCGACATATTTCCTTTTCTTTCAAATTCAGATATCTGCAAGCGATCTGTGTTCACATATGGTTCAACAATCCCTCTTGTTTATAGGCCCCGTCTCCTTATTTGTGGTGATGACTTTTCTGGGCTGGACCATATTGGGCCTGCTATTTTGCATGAATTGGAGAAATTTCCTGTTCATTCTATTGGACTACCTTCCCTTCTTTCTGATCCAAGTGCAAAGACACCTGAGGAGGCTTTGGTACATATATTCAGTGAAGCAAGACGAACATCTCCATCGGTTCTTTTTTTGCCTCAGTTTCAACTTTGGTGGGAAACGGCCCATCAGCAACTCAAGGCTGTCTTAATGACCCTTTTGGAGGATTTTCCATCACACCTTCCTATTATATTATTGGGAACATCTATGGAACCTTTTTCAGAACTTGATGAAGATACAACTTGCATATTTTCTCCTCGCACAGTGTATACAATTGACAAACCAACACTAGAAGATCGATCCATGTTTGTTGAACAAGTTGTTGAAGCCATCTTCTCCATGCCGACAGATGCAGCAGGAAAACGAAAAGAAGCAGCCTCGGTTCCTGAGCTCCAAAAGGCACCGAAAGAACCAAGTGGACCCAAAACATCAGAATTAAGGGCCAAGGCAGAAGCTGAGCAGCATGCACTTCGCCGATTACGCATGTGCCTCCGCGATGTTTGTAACCGGATTTTGTATGATAAACGATTCAGCATGTTTCATTATCCAGTTTCAGATGAGGATGCTCCAAACTATCGTTCTATTATCCAAAATCCAATAGACATAGCTACTATTTTGCAGAAAGTGGACTCTGGACAATATCATACTCTTTCATTATTTGTACAAGACGTTGACTTAATTGTCATGAATGCTAAGGTTTTTAATGGAGATGATTATAATGGTGCTAGAATTGTTAGCAAGGCTTATGAGCTTCAAGATGTGGTGCAAGGTATGCTATCACAAATGGACCCAGCTTTGGTCTCATACTGTGACAAAATTGCTGCACAAGGGGGCCCAACTCATATGCCAGAAGATGTTGGGGGATCAGCTATTCCTTCAGCACCCGTTGTTCAGTTAATTGCTGCTACTAGATCAAGTGCGCGCCTTCGTCACACTCATCCAGAAGTAAACTCATCAAAAAGTTTTGAGGCATTAAAAAGGCCAAGAAAAAATATTGACAATGAGCAACCGGAAGACAGATCCTTGAGCGCAGCAGCGATGGAAACGGAGCCGCCGAGCAATCCAAGCCCCAACATAGCGTCGGCCCAGGAGGCGGCGGAGGACGGATTTGAGAATCTGCTGGACTCAGAGCTCCTAGAAGAATCCGGAACGGATGCTGGCATTTCCTGCGAGGAGGTTTTCCAAGAACCAGAGAACGACGCCGACATCGCCAGCCGGATTGTCGCCGTGAAGCGCCGCCTTTTGGACCGCAGCGAGGGCTTTGGCGTGCCGCAGCTAGAGAGGCTTTACTGCCGCCTTATCAGAGGCACCTTGGAAGCCAAGAGGGAGGAGCCCGGCGAGACCCGCAGGCTCTCGGTTTTGCGGCATTTGCTGCGGTTCGTCGACAATGACCAGAATTTTTGATAACTTTTTTGCTTTCTTTCGCCTAAATATAAAGATTCTTTTTCTTAATGTACATTAATTACAATGGTTAAAAATTGCATGGTTCTTTTGTCCTATAATGAGGAATTCTATTGTCATTCAATTCGGATATTGTGTGATTAATATGTTTATAATTATAATTATTCGTGTTATGTTACTAAAAAGATAGAAATATCCCAATACTGGTAGAAGCTAGTGGGAATTATATTTCAAAAACAATGTTATTTTGAGCATAAGTTGTATAGCATTATGTGATAATACATTAGACTACATCAAGAACTATGGGTTGATGGCCCACGCATTTATCACGCTTTCCGATGAGACTGCCTTAAGCATTTGCCTGATTTTTATCATGATTGAGATTTCAAATATGAAATAATTGTGTTGTTGATGTGATTTGATTTTAAAGATTTGGAATAATAAAGCATG

Network for GWHGAAEX018122

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	443	578	1.40E-39
PF00439.24	Bromodomain	931	1002	6.60E-16

Protein Sequence

>GWHPAAEX018122
MDSKRDGPALRPLRTSDRLRQRRKMFGHGTFLYYKPVIRKKNKSKRRTAASQIAKMLRPRNRPARVTHLDPVVKNLRRSTRTRKLSINLEDYETDSSRTDDDLMAPKYHSSRRKVESNVSPDELSMSPRDRKIINSKSLSQHGKASHNELSTYPRSRRIINSVNLPRREGLRPRKSVGGSAVKSYRQFVDENESSEEQDEQEEQEDPEEQDEPEEQEEHDEAENGNAIVDDEADEADGDAGDEVEVDEDDEDGEEQDGRRRYDLRNRSEVRRSTFDKEGKQMPRRILHHGMGTKNSKDTRKGGSRVHKKHRFSRIDDSDDSLLVDELDEGPSIPWARSGKNGAPWLFGGLDMHGASAWGLNIAASGWSHQGDPMASLCSGVQTAGPSSKGGADIQPLQLDESISFDDIGGLSEYIDALKEMVFFPLLYPDFFANYNISPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQKNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGYKARAEILNIHTRKWKEPPSEELKGELAASCVGYCGADLKALCTEAAIRAFREKYPQVYNSDDKFVIDVNSINVQKFHFLEAMSTITPAAHRGSIVHSRPLSPIVCSLLQRHLQGIMKHIADIFPFLSNSDICKRSVFTYGSTIPLVYRPRLLICGDDFSGLDHIGPAILHELEKFPVHSIGLPSLLSDPSAKTPEEALVHIFSEARRTSPSVLFLPQFQLWWETAHQQLKAVLMTLLEDFPSHLPIILLGTSMEPFSELDEDTTCIFSPRTVYTIDKPTLEDRSMFVEQVVEAIFSMPTDAAGKRKEAASVPELQKAPKEPSGPKTSELRAKAEAEQHALRRLRMCLRDVCNRILYDKRFSMFHYPVSDEDAPNYRSIIQNPIDIATILQKVDSGQYHTLSLFVQDVDLIVMNAKVFNGDDYNGARIVSKAYELQDVVQGMLSQMDPALVSYCDKIAAQGGPTHMPEDVGGSAIPSAPVVQLIAATRSSARLRHTHPEVNSSKSFEALKRPRKNIDNEQPEDRSLSAAAMETEPPSNPSPNIASAQEAAEDGFENLLDSELLEESGTDAGISCEEVFQEPENDADIASRIVAVKRRLLDRSEGFGVPQLERLYCRLIRGTLEAKREEPGETRRLSVLRHLLRFVDNDQNF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.280
SRP064423	SRR2545915	Juvenile tuber	22.850
SRP108465	SRR5643513	five period of Gastrodia elata	19.080
	SRR5643514	five period of Gastrodia elata	19.670
	SRR5643515	five period of Gastrodia elata	17.460
	SRR5643524	five period of Gastrodia elata	19.980
	SRR5643525	five period of Gastrodia elata	17.180
	SRR5643528	five period of Gastrodia elata	15.120
	SRR5643658	five period of Gastrodia elata	19.110
	SRR5643659	five period of Gastrodia elata	22.580
	SRR5643660	five period of Gastrodia elata	25.080
	SRR5643661	five period of Gastrodia elata	22.880
	SRR5643662	five period of Gastrodia elata	19.330
	SRR5643663	five period of Gastrodia elata	19.730
	SRR5643664	five period of Gastrodia elata	19.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.340
SRP279888	Gastro	Gastrodia elata tuber	29.77
	Juven	Juvenile tuber	54.93
	Mother_Gastro	Mother tuber of Gastrodia elata	19.65
	Mother_Juven	Mother tuber of Juvenile	33.49