Detail information of GWHGAAEX018132/evm.TU.scaffold_90.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|319789996|ref|YP_004151629.1| | 0 | ATP-citrate lyase/succinyl-CoA ligase [Thermovibrio ammonificans HB-1] |
| KOG | KOG1254 | 0 | ATP-citrate lyase |
| nr | gi|743783584|ref|XP_010921453.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: ATP-citrate synthase beta chain protein 1-like [Elaeis guineensis] |
| Swissprot | tr|Q93VT8|ACLB1_ORYSJ | 0 | ATP-citrate synthase beta chain protein 1 |
| trEMBL | tr|M0RPI3|M0RPI3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P05030_001} |
| TAIR | AT5G49460 | 0 | ATP citrate lyase subunit B 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 267450 | 297023 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018132
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00549.18 | Ligase_CoA | 173 | 297 | 6.40E-12 |
| PF00285.20 | Citrate_synt | 399 | 593 | 3.10E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0046912 | Molecular Function | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 206.650 |
| SRR2545915 | Juvenile tuber | 174.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 145.620 |
| SRR5643514 | five period of Gastrodia elata | 150.250 | |
| SRR5643515 | five period of Gastrodia elata | 146.160 | |
| SRR5643524 | five period of Gastrodia elata | 162.140 | |
| SRR5643525 | five period of Gastrodia elata | 270.820 | |
| SRR5643528 | five period of Gastrodia elata | 386.920 | |
| SRR5643658 | five period of Gastrodia elata | 321.930 | |
| SRR5643659 | five period of Gastrodia elata | 167.300 | |
| SRR5643660 | five period of Gastrodia elata | 161.350 | |
| SRR5643661 | five period of Gastrodia elata | 145.220 | |
| SRR5643662 | five period of Gastrodia elata | 199.590 | |
| SRR5643663 | five period of Gastrodia elata | 212.120 | |
| SRR5643664 | five period of Gastrodia elata | 205.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 157.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 175.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 157.340 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 167.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 171.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 187.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 154.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 151.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 154.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 150.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 163.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 163.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 216.04 |
| Juven | Juvenile tuber | 266.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 343.43 | |
| Mother_Juven | Mother tuber of Juvenile | 376.14 |