Gene detail

Detail information of GWHGAAEX018133/evm.TU.scaffold_90.8

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672144383\|ref\|XP_008796092.1\|	2.69E-40	PREDICTED: zinc finger RNA-binding protein-like isoform X2 [Phoenix dactylifera]
trEMBL	tr\|A0A067KUQ7\|A0A067KUQ7_JATCU	6.00E-37	Uncharacterized protein {ECO:0000313\|EMBL:KDP39872.1}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000097	300792	331875	+

Transcript Sequence
>GWHTAAEX018133 ACCGAGCGAAGGCTCCCCCCTACGACCTATACCCTCGATTCTTCGTCTCCCCTTTACTCTCCTTCCCATCGTTCTTCGCCGCCGGCTAACTGCGGCGATGGAGTACTCTTCTCTAGCAGAAGCACAGCAACAGCAGTACCAGCAGCATCAATCGGATCCAAATCAAGTTTACGATCCCTCTCAGGCTCAAGCATATGCGGCCTATTACGCTGCCTGCGATCAATACTACGCCGCTTCCGCAGCCTACTATCAGCAGCCATACTACTCTCACGACTACTCGTCTTCCTCATCGGCAGCTGCCGGAGGCGCTTACTACACGGATGCACAGCCGGATTCTGCCCCTCCGCAGGTAGATGCAAGTCAGATCCAGTATCCCGGCCCGCACGGAACTGCCTACGCTCATTCTTCAGATCAGGATGCGTACTCGTATCAGGCTCCGCCGGCGCTGAACCCTGGGCCGGCAGCTGCTCCGATGAACCCTGCGGCGGCAGCGGCGCTTTCGCAGCTATCGCAGCTCACTGGGAGGATCGACGCTGCTGAGAGGGCAATGTCGGGGATGCACGACAGGCCACCGTTATCGCACTATCAACACTACTCCCATCCCATGGCTATACAGGCTGGGATCCCAGCAGTCGTCCCCGGGGCTTACAGGGGCGGAGGTCGAAGAGGCAGCAGAGGTATGAACAGAGGAGGCCCCATAGGTCAACTGCACTTCTCTGGAAGGCGCGGTCGCAGTGGCAGGGGCCGCGGAAGGCGTCCCCCTAATTCGGAATCACTGGCTGCGCCGCCACCGCCGCCGCCTTCACGGCCGCTGCCAAAGCAGGCTCCCAAAGCTTCTCAGAAATCCCTTCTTCCGGTCGCCTGGTGCGACATCTGCAGGGTCGACTGCAACAGCCTCGAGATCCTGGAACAGCACCGCAATGGAAAGCGGCACAAGAAGACCGTCCAGCGGGTCAACGAGATCCAGTCCCGGCAGAAGGCGGCCGCAAATCATGACCATCCAGAGGTCGAAATCGAGAAGGATGCCGTTGGCGTTGATGGGACGCCGGAGAACGCTGCGGCAGCTGAAACGGAGAATAATCCGCAGGACAGCGAGGCTCCGGCGGCGGCGGACGGGATGAATAAGAAGCGGAGGATGGCGGGGGGATATGACAGGTGGCGGGGAACGAGGGGGGGGAAGATGATGAGGATGGGGCGCGGGCATTACAGGGGATTGGAAAGAGGAGGGGCGGTGCAACGGCCTCCGAGGGACCGGCCTAGGGTTTGCACGGTGTGCAACGTGATGTGCGATACAATGGCGGTGTTCGAGTGCCACCTGTCCGGGAAGAAACACGTGTCGCGCGTCAAGCGGTTCGAGGGGCACGGCTCCGTGTTCGGCCCCATCAGCGTCTACATCCCTCCCAATCAGCCCATCGCCTGTCCTAACAATGGCCCCGACCCGCTCTTCTACGGCCTCCAGACCTACGAAGCCCTGCAGCGCGATCCCGTGATGAGCTTCGAGGAAGACGAAGAAGCTCCTGATGATCAAATACCGCACGGACAGGATCCCTCCATCGACACCGATGCACCCGCGATCAATCCGACGGCCACCGATGCGCCGGCGATCAATCCGACGGCGAGTGATGCACCGGCGATCGATCCCACGGCGAACGATGCGGCGGAAATGGATCAGACGGCGAACGATGCGGCAGAAACGGATCCGATGGAGAGTGATGCGGCGGAAACAGATCCCATGGAGAGCGATGCGGCGGAAACGGATCCGATGGAGAGCGATGCGGCGGAAACGGATCCAACGGAGAGCGATGCGGCGGCGGAAGATTCGGCTCCGGCGGTGGCGGCGGAAGATTCGGTTCCGCCGGCGGAGAGTGGCGGAGGTTCTGCTGGGACGGAGGAGCAGCTCGGGACTGCGGCTGAGTGACTACAAATGATGAGGTATGTTCTATGTAGCAGTCTGCTAGTTTTGCCTCTGTAGGCCTTATTTTAGGGAGTGATCGATATTATAATATTTGACGATATTCTTTTTTTTTTAGCTTCTGTTTCAACGTCTCTATGTGCTGCCCAGTTTAATCGAATTTTGTCCAAAAAAAAAAAAAAAAGATTTATTTATGACTTTGGAATTTGAATGTTATGATAGTTGCCGAATTTCTTTATAAAAATATTCAAATATATTTGATGTATTCTGCAACAGTTTCCAACCAGAGATTCTTGCACATATGATTGGAGAGTAT

Network for GWHGAAEX018133

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12874.6	zf-met	256	279	7.50E-05
PF12874.6	zf-met	390	412	0.00022

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.730
SRP064423	SRR2545915	Juvenile tuber	27.760
SRP108465	SRR5643513	five period of Gastrodia elata	43.080
	SRR5643514	five period of Gastrodia elata	45.460
	SRR5643515	five period of Gastrodia elata	42.260
	SRR5643524	five period of Gastrodia elata	45.520
	SRR5643525	five period of Gastrodia elata	58.480
	SRR5643528	five period of Gastrodia elata	56.030
	SRR5643658	five period of Gastrodia elata	46.950
	SRR5643659	five period of Gastrodia elata	67.180
	SRR5643660	five period of Gastrodia elata	67.840
	SRR5643661	five period of Gastrodia elata	68.550
	SRR5643662	five period of Gastrodia elata	76.970
	SRR5643663	five period of Gastrodia elata	66.940
	SRR5643664	five period of Gastrodia elata	79.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	58.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	61.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	59.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.340
SRP279888	Gastro	Gastrodia elata tuber	103.05
	Juven	Juvenile tuber	81.81
	Mother_Gastro	Mother tuber of Gastrodia elata	70.28
	Mother_Juven	Mother tuber of Juvenile	82.86