Detail information of GWHGAAEX018141/evm.TU.scaffold_90.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-108 | FOG: PPR repeat |
| nr | gi|743872973|ref|XP_010906700.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g31840 [Elaeis guineensis] |
| Swissprot | tr|Q9C6S6|PPR67_ARATH | 1.00E-144 | Putative pentatricopeptide repeat-containing protein At1g31840 |
| trEMBL | tr|D7U3Z2|D7U3Z2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI37461.3} |
| trEMBL | tr|D7U3Z2|D7U3Z2_VITVI | 2.00E-23 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI37461.3} |
| TAIR | AT1G31840 | 3.00E-108 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 433077 | 443519 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018141
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 159 | 191 | 1.00E-09 |
| PF13041.5 | PPR_2 | 198 | 247 | 7.80E-10 |
| PF13041.5 | PPR_2 | 268 | 317 | 1.20E-15 |
| PF01535.19 | PPR | 374 | 393 | 0.071 |
| PF13041.5 | PPR_2 | 405 | 454 | 1.80E-09 |
| PF12854.6 | PPR_1 | 474 | 495 | 8.30E-07 |
| PF13041.5 | PPR_2 | 510 | 559 | 4.00E-17 |
| PF13041.5 | PPR_2 | 580 | 629 | 5.20E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.190 |
| SRR2545915 | Juvenile tuber | 13.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.740 |
| SRR5643514 | five period of Gastrodia elata | 8.870 | |
| SRR5643515 | five period of Gastrodia elata | 6.680 | |
| SRR5643524 | five period of Gastrodia elata | 8.200 | |
| SRR5643525 | five period of Gastrodia elata | 8.790 | |
| SRR5643528 | five period of Gastrodia elata | 6.440 | |
| SRR5643658 | five period of Gastrodia elata | 7.020 | |
| SRR5643659 | five period of Gastrodia elata | 12.200 | |
| SRR5643660 | five period of Gastrodia elata | 14.090 | |
| SRR5643661 | five period of Gastrodia elata | 10.760 | |
| SRR5643662 | five period of Gastrodia elata | 10.620 | |
| SRR5643663 | five period of Gastrodia elata | 12.460 | |
| SRR5643664 | five period of Gastrodia elata | 10.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.93 |
| Juven | Juvenile tuber | 14.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.63 | |
| Mother_Juven | Mother tuber of Juvenile | 9.87 |