Detail information of GWHGAAEX018143/evm.TU.scaffold_90.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294055098|ref|YP_003548756.1| | 0 | nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221] |
| KOG | KOG2666 | 0 | UDP-glucose/GDP-mannose dehydrogenase |
| nr | gi|695015767|ref|XP_009394770.1| | 0 | PREDICTED: UDP-glucose 6-dehydrogenase 4 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q2QS14|UGDH4_ORYSJ | 0 | UDP-glucose 6-dehydrogenase 4 |
| trEMBL | tr|B8BPH4|B8BPH4_ORYSI | 0 | UDP-glucose 6-dehydrogenase {ECO:0000256|PIRNR:PIRNR000124} |
| TAIR | AT5G15490 | 0 | UDP-glucose 6-dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 474075 | 477612 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018143
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03721.13 | UDPG_MGDP_dh_N | 3 | 186 | 4.20E-67 |
| PF00984.18 | UDPG_MGDP_dh | 210 | 304 | 3.00E-31 |
| PF03720.14 | UDPG_MGDP_dh_C | 328 | 451 | 1.80E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0051287 | Molecular Function | NAD binding |
| GO:0003979 | Molecular Function | UDP-glucose 6-dehydrogenase activity |
| GO:0016616 | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 58.930 |
| SRR2545915 | Juvenile tuber | 11.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.560 |
| SRR5643514 | five period of Gastrodia elata | 20.210 | |
| SRR5643515 | five period of Gastrodia elata | 54.770 | |
| SRR5643524 | five period of Gastrodia elata | 25.640 | |
| SRR5643525 | five period of Gastrodia elata | 46.740 | |
| SRR5643528 | five period of Gastrodia elata | 44.690 | |
| SRR5643658 | five period of Gastrodia elata | 35.980 | |
| SRR5643659 | five period of Gastrodia elata | 19.640 | |
| SRR5643660 | five period of Gastrodia elata | 10.180 | |
| SRR5643661 | five period of Gastrodia elata | 17.380 | |
| SRR5643662 | five period of Gastrodia elata | 27.640 | |
| SRR5643663 | five period of Gastrodia elata | 24.840 | |
| SRR5643664 | five period of Gastrodia elata | 46.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 202.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 234.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 67.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 209.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 66.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.49 |
| Juven | Juvenile tuber | 4.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 239.99 | |
| Mother_Juven | Mother tuber of Juvenile | 56.52 |