Detail information of GWHGAAEX018144/evm.TU.scaffold_90.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186686533|ref|YP_001869729.1| | 2.00E-12 | hypothetical protein Npun_R6524 [Nostoc punctiforme PCC 73102] |
| KOG | KOG4658 | 5.00E-92 | Apoptotic ATPase |
| nr | gi|694998032|ref|XP_009402454.1| | 0 | PREDICTED: putative disease resistance protein RGA4 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q7XA40|RGA3_SOLBU | 9.00E-118 | Putative disease resistance protein RGA3 |
| trEMBL | tr|M0RZR1|M0RZR1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P14030_001} |
| TAIR | AT3G14470 | 5.00E-92 | NB-ARC domain-containing disease resistance protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 478924 | 499572 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018144
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00931.21 | NB-ARC | 197 | 462 | 1.00E-59 |
| PF12799.6 | LRR_4 | 574 | 613 | 1.10E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0043531 | Molecular Function | ADP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.910 |
| SRR2545915 | Juvenile tuber | 3.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.650 |
| SRR5643514 | five period of Gastrodia elata | 3.130 | |
| SRR5643515 | five period of Gastrodia elata | 2.820 | |
| SRR5643524 | five period of Gastrodia elata | 3.200 | |
| SRR5643525 | five period of Gastrodia elata | 6.540 | |
| SRR5643528 | five period of Gastrodia elata | 4.830 | |
| SRR5643658 | five period of Gastrodia elata | 5.700 | |
| SRR5643659 | five period of Gastrodia elata | 1.260 | |
| SRR5643660 | five period of Gastrodia elata | 0.650 | |
| SRR5643661 | five period of Gastrodia elata | 0.660 | |
| SRR5643662 | five period of Gastrodia elata | 1.170 | |
| SRR5643663 | five period of Gastrodia elata | 1.800 | |
| SRR5643664 | five period of Gastrodia elata | 1.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.77 |
| Juven | Juvenile tuber | 3.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.29 | |
| Mother_Juven | Mother tuber of Juvenile | 3.20 |