Detail information of GWHGAAEX018148/evm.TU.scaffold_90.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|410662198|ref|YP_006914569.1| | 9.00E-12 | Branched-chain amino acid ABC transporter, amino acid-binding protein [Dehalobacter sp. CF] |
| KOG | KOG1052 | 0 | Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits |
| nr | gi|672112188|ref|XP_008804484.1| | 0 | PREDICTED: glutamate receptor 3.1-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q7XP59|GLR31_ORYSJ | 0 | Glutamate receptor 3.1 (Precursor) |
| trEMBL | tr|M0SI71|M0SI71_MUSAM | 0 | Glutamate receptor {ECO:0000256|PIRNR:PIRNR037090} |
| TAIR | AT1G05200 | 0 | glutamate receptor 3.4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 556400 | 572063 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018148
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01094.27 | ANF_receptor | 50 | 409 | 1.40E-79 |
| PF10613.8 | Lig_chan-Glu_bd | 487 | 574 | 3.50E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004970 | Molecular Function | ionotropic glutamate receptor activity |
| GO:0015276 | Molecular Function | ligand-gated ion channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.020 |
| SRR2545915 | Juvenile tuber | 2.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.250 |
| SRR5643514 | five period of Gastrodia elata | 13.540 | |
| SRR5643515 | five period of Gastrodia elata | 9.090 | |
| SRR5643524 | five period of Gastrodia elata | 10.500 | |
| SRR5643525 | five period of Gastrodia elata | 2.460 | |
| SRR5643528 | five period of Gastrodia elata | 2.420 | |
| SRR5643658 | five period of Gastrodia elata | 0.780 | |
| SRR5643659 | five period of Gastrodia elata | 7.100 | |
| SRR5643660 | five period of Gastrodia elata | 8.760 | |
| SRR5643661 | five period of Gastrodia elata | 4.540 | |
| SRR5643662 | five period of Gastrodia elata | 11.530 | |
| SRR5643663 | five period of Gastrodia elata | 4.390 | |
| SRR5643664 | five period of Gastrodia elata | 8.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.40 |
| Juven | Juvenile tuber | 20.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.67 | |
| Mother_Juven | Mother tuber of Juvenile | 6.71 |