Detail information of GWHGAAEX018161/evm.TU.scaffold_90.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0826 | 5.00E-175 | Predicted E3 ubiquitin ligase involved in peroxisome organization |
| nr | gi|672123596|ref|XP_008785165.1| | 0 | PREDICTED: peroxisome biogenesis protein 12 [Phoenix dactylifera] |
| Swissprot | tr|Q9M841|PEX12_ARATH | 0 | Peroxisome biogenesis protein 12 |
| trEMBL | tr|A0A059D4A1|A0A059D4A1_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW85314.1} |
| TAIR | AT3G04460 | 5.00E-175 | peroxin-12 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 890635 | 912834 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018161
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04757.13 | Pex2_Pex12 | 20 | 304 | 6.80E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13345 | PEX12, PAF3 | Peroxisome | map04146 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006625 | Biological Process | protein targeting to peroxisome |
| GO:0008022 | Molecular Function | protein C-terminus binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005779 | Cellular Component | integral component of peroxisomal membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.440 |
| SRR2545915 | Juvenile tuber | 19.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.560 |
| SRR5643514 | five period of Gastrodia elata | 16.560 | |
| SRR5643515 | five period of Gastrodia elata | 14.770 | |
| SRR5643524 | five period of Gastrodia elata | 16.590 | |
| SRR5643525 | five period of Gastrodia elata | 18.800 | |
| SRR5643528 | five period of Gastrodia elata | 18.190 | |
| SRR5643658 | five period of Gastrodia elata | 22.830 | |
| SRR5643659 | five period of Gastrodia elata | 17.920 | |
| SRR5643660 | five period of Gastrodia elata | 18.920 | |
| SRR5643661 | five period of Gastrodia elata | 17.040 | |
| SRR5643662 | five period of Gastrodia elata | 16.580 | |
| SRR5643663 | five period of Gastrodia elata | 19.060 | |
| SRR5643664 | five period of Gastrodia elata | 20.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.46 |
| Juven | Juvenile tuber | 17.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.03 | |
| Mother_Juven | Mother tuber of Juvenile | 17.55 |