Detail information of GWHGAAEX018162/evm.TU.scaffold_90.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220914187|ref|YP_002489496.1| | 2.00E-15 | cellulose synthase [Arthrobacter chlorophenolicus A6] |
| nr | gi|695027201|ref|XP_009400930.1| | 0 | PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q84JA6|CESA4_ARATH | 0 | Cellulose synthase A catalytic subunit 4 [UDP-forming] |
| trEMBL | tr|M4NVR3|M4NVR3_BETPL | 0 | Cellulose synthase {ECO:0000256|RuleBase:RU361116} |
| TAIR | AT5G44030 | 0 | cellulose synthase A4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 922467 | 929130 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018162
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14569.5 | zf-UDP | 2 | 78 | 6.20E-30 |
| PF03552.13 | Cellulose_synt | 246 | 983 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.220 |
| SRR2545915 | Juvenile tuber | 2.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.770 |
| SRR5643514 | five period of Gastrodia elata | 5.630 | |
| SRR5643515 | five period of Gastrodia elata | 5.000 | |
| SRR5643524 | five period of Gastrodia elata | 4.130 | |
| SRR5643525 | five period of Gastrodia elata | 257.530 | |
| SRR5643528 | five period of Gastrodia elata | 130.190 | |
| SRR5643658 | five period of Gastrodia elata | 565.350 | |
| SRR5643659 | five period of Gastrodia elata | 4.540 | |
| SRR5643660 | five period of Gastrodia elata | 6.020 | |
| SRR5643661 | five period of Gastrodia elata | 4.500 | |
| SRR5643662 | five period of Gastrodia elata | 11.350 | |
| SRR5643663 | five period of Gastrodia elata | 9.900 | |
| SRR5643664 | five period of Gastrodia elata | 16.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.72 |
| Juven | Juvenile tuber | 12.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.27 | |
| Mother_Juven | Mother tuber of Juvenile | 5.92 |