Detail information of GWHGAAEX018165/evm.TU.scaffold_90.42


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|220919241|ref|YP_002494545.1|8.00E-29amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
KOGKOG12370H+/oligopeptide symporter
nrgi|672123604|ref|XP_008785170.1|0PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Phoenix dactylifera]
Swissprottr|Q9FNL7|PTR3_ARATH0Protein NRT1/ PTR FAMILY 5.2
trEMBLtr|M0RNT7|M0RNT7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P02570_001}
TAIRAT5G460500peptide transporter 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000097959942991642+
Transcript Sequence

Network for GWHGAAEX018165

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00854.20PTR21025159.70E-98
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0022857Molecular Functiontransmembrane transporter activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.530
SRR2545915Juvenile tuber4.480
SRP108465SRR5643513five period of Gastrodia elata99.970
SRR5643514five period of Gastrodia elata115.400
SRR5643515five period of Gastrodia elata119.510
SRR5643524five period of Gastrodia elata109.820
SRR5643525five period of Gastrodia elata15.030
SRR5643528five period of Gastrodia elata3.320
SRR5643658five period of Gastrodia elata5.860
SRR5643659five period of Gastrodia elata10.790
SRR5643660five period of Gastrodia elata8.730
SRR5643661five period of Gastrodia elata8.240
SRR5643662five period of Gastrodia elata2.210
SRR5643663five period of Gastrodia elata3.320
SRR5643664five period of Gastrodia elata2.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_190.070
SRR6049655Rhizomagastrodiae_C368-T10_good_1126.400
SRR6049656Rhizomagastrodiae_C368-T07_good_192.330
SRR6049657Rhizomagastrodiae_C368-T07_good_197.190
SRR6049658Rhizomagastrodiae_C368-T04_good_1153.830
SRR6049659Rhizomagastrodiae_C368-T04_good_1153.330
SRR6049660Rhizomagastrodiae_C368-T01_good_188.420
SRR6049661Rhizomagastrodiae_C368-T04_good_1115.310
SRR6049662Rhizomagastrodiae_C368-T01_good_142.070
SRR6049663Rhizomagastrodiae_C368-T01_good_155.580
SRR6049664Rhizomagastrodiae_C368-T10_good_172.520
SRR6049665Rhizomagastrodiae_C368-T10_good_172.520
SRP279888GastroGastrodia elata tuber 14.78
JuvenJuvenile tuber85.81
Mother_GastroMother tuber of Gastrodia elata 29.46
Mother_JuvenMother tuber of Juvenile 21.09