Detail information of GWHGAAEX018166/evm.TU.scaffold_90.43


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|91786529|ref|YP_547481.1|2.00E-07RNA recognition motif-containing protein [Polaromonas sp. JS666]
KOGKOG42052.00E-89RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
nrgi|566189662|ref|XP_006378320.1|2.08E-141hypothetical protein POPTR_0010s07790g [Populus trichocarpa]
Swissprottr|Q8W034|RNP1_ARATH2.00E-95Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|U5G3V3|U5G3V3_POPTR8.00E-142Uncharacterized protein {ECO:0000313|EMBL:ERP56117.1}
TAIRAT2G334102.00E-89RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009710002241010543+
Transcript Sequence

Network for GWHGAAEX018166

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_18753.90E-15
PF00076.21RRM_11161832.10E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14411MSI mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms157.960
SRR2545915Juvenile tuber137.120
SRP108465SRR5643513five period of Gastrodia elata132.600
SRR5643514five period of Gastrodia elata121.220
SRR5643515five period of Gastrodia elata108.370
SRR5643524five period of Gastrodia elata120.820
SRR5643525five period of Gastrodia elata91.840
SRR5643528five period of Gastrodia elata76.240
SRR5643658five period of Gastrodia elata78.310
SRR5643659five period of Gastrodia elata141.180
SRR5643660five period of Gastrodia elata171.690
SRR5643661five period of Gastrodia elata185.140
SRR5643662five period of Gastrodia elata173.030
SRR5643663five period of Gastrodia elata147.960
SRR5643664five period of Gastrodia elata197.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1170.190
SRR6049655Rhizomagastrodiae_C368-T10_good_196.640
SRR6049656Rhizomagastrodiae_C368-T07_good_1152.920
SRR6049657Rhizomagastrodiae_C368-T07_good_1213.710
SRR6049658Rhizomagastrodiae_C368-T04_good_1207.050
SRR6049659Rhizomagastrodiae_C368-T04_good_1255.690
SRR6049660Rhizomagastrodiae_C368-T01_good_1206.370
SRR6049661Rhizomagastrodiae_C368-T04_good_1195.840
SRR6049662Rhizomagastrodiae_C368-T01_good_1152.980
SRR6049663Rhizomagastrodiae_C368-T01_good_1185.090
SRR6049664Rhizomagastrodiae_C368-T10_good_1138.700
SRR6049665Rhizomagastrodiae_C368-T10_good_1138.700
SRP279888GastroGastrodia elata tuber 177.30
JuvenJuvenile tuber220.02
Mother_GastroMother tuber of Gastrodia elata 71.39
Mother_JuvenMother tuber of Juvenile 115.88