Gene detail

Detail information of GWHGAAEX018168/evm.TU.scaffold_90.46

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|694405048\|ref\|XP_009377383.1\|	PREDICTED: uncharacterized protein LOC103965996 isoform X2 [Pyrus x bretschneideri]
trEMBL	tr\|B9IKQ8\|B9IKQ8_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEF02826.2}
TAIR	AT2G25660	embryo defective 2410

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000097	1088858	1135119	-

Transcript Sequence
>GWHTAAEX018168 ATGAACTTTGCCTTTGGAAAACCTCTTGTTCCTCTATTTAAGGATGGTTTGTTGTTTATACAGTGGTCCGTAGTTGTTGCAGTTATGTCTACCATTGGAATGTTCATATGGTATGCTCAGATAAGGGCTAGGAGATTTATTGAGGTTCAGCTTCTTCCTTCTGTTTGCTCCATTTTAAGTGGATACATTCAAAGAGAGATTGATTTTGGCACAGTTCATAGTGTTTCACCTTTGGGCTTTACTGTAGAGGCATGTTCTATTGGGCCTCATCGGGAAGAATTTTCTTGTGGTGAGGTATCCACCTTGAAAATTCGTGTCCGCCCCTTTGCAAGCTTGAGGAGGAGAAAGATTGTCATAAATGCTTTTCTATCACAGCCTAATATTGTAGTGTCACAGAGGGATGATTTCTCTTGGTTAGGTATTCCTTCACCATCTGAAACTGGTTTGCACAGACACTGTTCTTCTGAAGAAGGGATAGACTATCGCACTAAAATCAGAAGGCTTGCAAGAGAAGAATCTATTGCTTGTTGGAGTAAAGAAAGGGTCAAAGCAGCAAGGGAGGCTGCAGTGGAGGGTTACATAGTTCCTCCAGGAAGTTCAGATTTTTTGATGAATAGTGGGACAAAGGACAATTCTGTGCATTCTGGTCTTCCTGTTTCATTCAGTTCATTTAACAGCATGAACGACAATATGCAATGCAAGGATCATAGCTCAACCATATTGGCTGAGGATAGTCTGAAACATGCTGATCTGGAGAAATCTTTTGGTGTGAAATGTTCTGTTCGTGGACAGAACCTGTCTATGATAATACCTGGCTTTGTGAGACATAGGTTGAAAGGAATTACTTGGAAGAGATCGCCATTTGCATCTGGCATAACTGCCAAGAAACGAAACCTTCAGCATAGTGCAGCAGCTGCCCGTGCATATTTTCAGGGTCAACCTAACGTGAAGGCTGATGAGCTATGTGCCAAACAAGGAGTGGATTTTTCTCATGGAGGCTTTGAAAATGATGGTACTAGCGAACATTATCTGGTGAATGAAGCATCTGATAATGCTAAGGCAATTGCATTAAGTGTGCTTGATAAGCATGGCCCAGAAGATCGTTCCATGAATTTGTATGTTAATAATGAGCAACATAAAACTGGTACAGCTCCTGATAATGATACTTCCTATTTAACAGGTACTGCAAGGCTTAAGAGTTCAAGTCATGTTAGCATTCATAGAGGTGAAAACCCCTATACGCAAGATGCTGGTCCTGAAGAATTACCTTTTTTTGATTGGTTCATTGCTCAAGTTCAGAAATTTAAGTTGCACTTTGCTATAAATGCTGAGGATATTGCTGCTGAACTTAATCAAACTGTCGACCAAATTCATGCCAAAGGTGTTGAGAAAGTCGTTCCAATTACCTTAGATTCTGTTTATTTCAAAGAGGGAACTCTCATGCTACTTGGTTATGGTGACAGGGAGCCCAGGGAAATGGTGAACGCTAATGGGTACTTAAAATTTCAAAATCAGTACAGTCGTGTCCATGTGCAACTGAGTGGAGACTGTATGGGATGGAGAACTGACAACCCTTCTTTTAACGGAGGCCATCTCTCAGCGCTTGTTTTTGTTGATACAACTGAGCATAAATGGCATGCTGACTTGAAGATTACAAACCTGTTTGCTCCTCTATTTGAAAGGATTCTTGATATTCCAATTTTGTGGTCTCAAGGAAGAGCTACTGGTGAGGTGGTTCATATATGCATGTCAGCAGGAGATACTTTTCCTAATATTCATGGACAACTTGAAGTGACGGATCTATCTTTCAAGATAAGTGACGCTCCATCTATTTTTTCGGAAATAACTGCTACTTTGTTCTTTTGCGGCCAAAGGGTATTTTTGCACAACGCGGGTGGTTATTTTGGAGATGTTCCCATTGATGCCTCTGGTGACTTTGGCATAAATCCAAATGATGGGGAATTTCATTTAATGTGTCAGGTTCCATGTGTTGAGGTGAATGCTCTTATGAAGACTTTAAAAATGAGACCTTTGATGTTTCCTTTGGCTGGCTCAGTAACTGCGATTTTCAATTGCCAAGGTCCTTTGGATGCTCCTCTGTTTGTAGGAAGTGGAATTGTATCTAGAAAGGCTTCTAACTCTGGGTTTACTCAGCATCAATCCTCTGCATCCGATGCAATAATTAAGAATAAAGAAGCTGGTGCGGTGGCCGCATTTGACCATATTCCATTTTTGCACGTATCAGCTAATTTTACTTTCAACCTTGATAACAGTGTTGCTGATCTCTATGGTATAAGGGTGACCCTGCTTGATGGCGGTGAAATTCGTGGTGCCGGTAATGTGTGGATTTGCCCAGAGGCGGAGGCAGACGATACAGCGATGGATTTGAATTTCTCTGGAAAGTTCTTGTTTGATAAAGTCTTACAGAGGTATTCAGCACCAGGTGTTCATTTGATGCCTTTCAAAATCGGGGAAATCAACGGGGAGACCAAGTTGTCTGGGTCTATTTTGAAACCGAGATTTGATATAAAGTGGGCTGCACCTGAGGCAGAAGATTCATTCACTGATGCACATGGCGAAATTATAATATCTCACGAGTTTATTACTATCATCTCATCAGCAGTTGCCTTTGACTTGAATACTAAAATTCAAGCTCAATATCTTGATAGCTGCTCACAACTTGAGTGTCCTCGAACTAAGACTTCTCTTATTATCGAGGCAATTGATCTGGATTTACGCATGCGAGGATTTGAGTTGGCCAGTTTTATTTCAACTTCTTTTGATGCACCTAGATCGCTTCATTTAAGGACAACTGGAAGGTTCAAACTTCAAGGAAAAGTTGTCAAGCCAATTAGACGTTTTGATGGGAAGGAAACAGAATCTTGTGGATTGCCAAACTTTCATACGGCTGATGATGACAAACCAAGACTTTTTGGAGAGATTTCCCTCTCCGGAATCAAGATTAACCAACTTATGTTGGCACCTCAGTTAGCCGGCTGTCTCTATATATCACATGATGCTATAAAGTTGGATGCCATAGGCCGAGCTGATGAAAATTTGTCAGTGGAGGTTATTGGACTGACGAGTCATCAAACTGATGACACGGTATATGACAATAGGTCACTGTCTTTTTCTCTTCAAAAGGGACAACTGAAAGCTAATGTTTGTTACCTGCCTCAACATTCTGCAAGTTTGGAGGTAAGAAACTTGCCGCTTGATGAATTGGAGCTTGCATCTCTTAGAGGGACCATTCAAAGG

Network for GWHGAAEX018168

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX018168
MNFAFGKPLVPLFKDGLLFIQWSVVVAVMSTIGMFIWYAQIRARRFIEVQLLPSVCSILSGYIQREIDFGTVHSVSPLGFTVEACSIGPHREEFSCGEVSTLKIRVRPFASLRRRKIVINAFLSQPNIVVSQRDDFSWLGIPSPSETGLHRHCSSEEGIDYRTKIRRLAREESIACWSKERVKAAREAAVEGYIVPPGSSDFLMNSGTKDNSVHSGLPVSFSSFNSMNDNMQCKDHSSTILAEDSLKHADLEKSFGVKCSVRGQNLSMIIPGFVRHRLKGITWKRSPFASGITAKKRNLQHSAAAARAYFQGQPNVKADELCAKQGVDFSHGGFENDGTSEHYLVNEASDNAKAIALSVLDKHGPEDRSMNLYVNNEQHKTGTAPDNDTSYLTGTARLKSSSHVSIHRGENPYTQDAGPEELPFFDWFIAQVQKFKLHFAINAEDIAAELNQTVDQIHAKGVEKVVPITLDSVYFKEGTLMLLGYGDREPREMVNANGYLKFQNQYSRVHVQLSGDCMGWRTDNPSFNGGHLSALVFVDTTEHKWHADLKITNLFAPLFERILDIPILWSQGRATGEVVHICMSAGDTFPNIHGQLEVTDLSFKISDAPSIFSEITATLFFCGQRVFLHNAGGYFGDVPIDASGDFGINPNDGEFHLMCQVPCVEVNALMKTLKMRPLMFPLAGSVTAIFNCQGPLDAPLFVGSGIVSRKASNSGFTQHQSSASDAIIKNKEAGAVAAFDHIPFLHVSANFTFNLDNSVADLYGIRVTLLDGGEIRGAGNVWICPEAEADDTAMDLNFSGKFLFDKVLQRYSAPGVHLMPFKIGEINGETKLSGSILKPRFDIKWAAPEAEDSFTDAHGEIIISHEFITIISSAVAFDLNTKIQAQYLDSCSQLECPRTKTSLIIEAIDLDLRMRGFELASFISTSFDAPRSLHLRTTGRFKLQGKVVKPIRRFDGKETESCGLPNFHTADDDKPRLFGEISLSGIKINQLMLAPQLAGCLYISHDAIKLDAIGRADENLSVEVIGLTSHQTDDTVYDNRSLSFSLQKGQLKANVCYLPQHSASLEVRNLPLDELELASLRGTIQR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.350
SRP064423	SRR2545915	Juvenile tuber	13.240
SRP108465	SRR5643513	five period of Gastrodia elata	3.090
	SRR5643514	five period of Gastrodia elata	3.610
	SRR5643515	five period of Gastrodia elata	4.470
	SRR5643524	five period of Gastrodia elata	3.170
	SRR5643525	five period of Gastrodia elata	4.550
	SRR5643528	five period of Gastrodia elata	2.740
	SRR5643658	five period of Gastrodia elata	5.370
	SRR5643659	five period of Gastrodia elata	5.470
	SRR5643660	five period of Gastrodia elata	6.550
	SRR5643661	five period of Gastrodia elata	4.990
	SRR5643662	five period of Gastrodia elata	5.280
	SRR5643663	five period of Gastrodia elata	6.310
	SRR5643664	five period of Gastrodia elata	6.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.230
SRP279888	Gastro	Gastrodia elata tuber	6.89
	Juven	Juvenile tuber	5.54
	Mother_Gastro	Mother tuber of Gastrodia elata	2.69
	Mother_Juven	Mother tuber of Juvenile	4.30