Detail information of GWHGAAEX018170/evm.TU.scaffold_90.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|71277763|ref|YP_270010.1| | 9.00E-82 | serine protease [Colwellia psychrerythraea 34H] |
| nr | gi|743873468|ref|XP_010906821.1| | 0 | PREDICTED: subtilisin-like protease SDD1 [Elaeis guineensis] |
| Swissprot | tr|O64495|SDD1_ARATH | 2.00E-164 | Subtilisin-like protease SDD1 {ECO:0000303|PubMed:10809670} (Precursor) |
| trEMBL | tr|B9RBY5|B9RBY5_RICCO | 0 | Cucumisin, putative {ECO:0000313|EMBL:EEF51056.1} |
| TAIR | AT1G04110 | 5.00E-164 | Subtilase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 1226012 | 1231261 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018170
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05922.15 | Inhibitor_I9 | 68 | 148 | 9.60E-06 |
| PF00082.21 | Peptidase_S8 | 172 | 579 | 5.50E-46 |
| PF02225.21 | PA | 402 | 469 | 1.20E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.050 |
| SRR2545915 | Juvenile tuber | 2.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.780 |
| SRR5643514 | five period of Gastrodia elata | 6.020 | |
| SRR5643515 | five period of Gastrodia elata | 6.780 | |
| SRR5643524 | five period of Gastrodia elata | 7.530 | |
| SRR5643525 | five period of Gastrodia elata | 7.460 | |
| SRR5643528 | five period of Gastrodia elata | 6.710 | |
| SRR5643658 | five period of Gastrodia elata | 5.690 | |
| SRR5643659 | five period of Gastrodia elata | 8.280 | |
| SRR5643660 | five period of Gastrodia elata | 7.130 | |
| SRR5643661 | five period of Gastrodia elata | 10.250 | |
| SRR5643662 | five period of Gastrodia elata | 11.530 | |
| SRR5643663 | five period of Gastrodia elata | 9.910 | |
| SRR5643664 | five period of Gastrodia elata | 10.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.05 |
| Juven | Juvenile tuber | 7.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.58 | |
| Mother_Juven | Mother tuber of Juvenile | 10.85 |