Detail information of GWHGAAEX018171/evm.TU.scaffold_90.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743873274|ref|XP_010906775.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Elaeis guineensis] |
| Swissprot | tr|Q9LW63|PP251_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At3g23330 |
| trEMBL | tr|F6HMU0|F6HMU0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55965.1} |
| TAIR | AT3G23330 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000097 | 1312819 | 1327634 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018171
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 85 | 113 | 0.0021 |
| PF01535.19 | PPR | 155 | 183 | 0.019 |
| PF13041.5 | PPR_2 | 200 | 243 | 1.50E-10 |
| PF13041.5 | PPR_2 | 300 | 348 | 5.90E-08 |
| PF01535.19 | PPR | 376 | 400 | 0.16 |
| PF01535.19 | PPR | 404 | 432 | 2.60E-05 |
| PF01535.19 | PPR | 439 | 466 | 0.045 |
| PF01535.19 | PPR | 477 | 501 | 0.96 |
| PF01535.19 | PPR | 546 | 571 | 0.047 |
| PF14432.5 | DYW_deaminase | 575 | 699 | 1.00E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.930 |
| SRR2545915 | Juvenile tuber | 4.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.730 |
| SRR5643514 | five period of Gastrodia elata | 3.850 | |
| SRR5643515 | five period of Gastrodia elata | 3.340 | |
| SRR5643524 | five period of Gastrodia elata | 3.940 | |
| SRR5643525 | five period of Gastrodia elata | 1.880 | |
| SRR5643528 | five period of Gastrodia elata | 0.780 | |
| SRR5643658 | five period of Gastrodia elata | 1.350 | |
| SRR5643659 | five period of Gastrodia elata | 3.810 | |
| SRR5643660 | five period of Gastrodia elata | 3.140 | |
| SRR5643661 | five period of Gastrodia elata | 3.780 | |
| SRR5643662 | five period of Gastrodia elata | 3.640 | |
| SRR5643663 | five period of Gastrodia elata | 3.890 | |
| SRR5643664 | five period of Gastrodia elata | 3.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.48 |
| Juven | Juvenile tuber | 6.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.62 | |
| Mother_Juven | Mother tuber of Juvenile | 1.77 |