Detail information of GWHGAAEX018182/evm.TU.scaffold_90.64


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG10120Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain
nrgi|743780252|ref|XP_010920463.1|0PREDICTED: synaptotagmin-3 [Elaeis guineensis]
Swissprottr|Q7XA06|SYT3_ARATH0Synaptotagmin-3
trEMBLtr|C5Z8A3|C5Z8A3_SORBI0Plant synaptotagmin {ECO:0000313|EMBL:EER88839.1}
TAIRAT5G042200Calcium-dependent lipid-binding (CaLB domain) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009718580451901448+
Transcript Sequence

Network for GWHGAAEX018182

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17047.4SMP_LBD672484.30E-12
PF00168.29C22613628.90E-20
PF00168.29C24255253.20E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008289Molecular Functionlipid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.220
SRR2545915Juvenile tuber16.550
SRP108465SRR5643513five period of Gastrodia elata15.070
SRR5643514five period of Gastrodia elata20.080
SRR5643515five period of Gastrodia elata14.790
SRR5643524five period of Gastrodia elata18.050
SRR5643525five period of Gastrodia elata15.910
SRR5643528five period of Gastrodia elata11.860
SRR5643658five period of Gastrodia elata16.630
SRR5643659five period of Gastrodia elata8.190
SRR5643660five period of Gastrodia elata8.000
SRR5643661five period of Gastrodia elata8.050
SRR5643662five period of Gastrodia elata7.110
SRR5643663five period of Gastrodia elata10.250
SRR5643664five period of Gastrodia elata9.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.700
SRR6049655Rhizomagastrodiae_C368-T10_good_123.750
SRR6049656Rhizomagastrodiae_C368-T07_good_119.810
SRR6049657Rhizomagastrodiae_C368-T07_good_118.980
SRR6049658Rhizomagastrodiae_C368-T04_good_121.240
SRR6049659Rhizomagastrodiae_C368-T04_good_121.650
SRR6049660Rhizomagastrodiae_C368-T01_good_115.120
SRR6049661Rhizomagastrodiae_C368-T04_good_113.830
SRR6049662Rhizomagastrodiae_C368-T01_good_118.650
SRR6049663Rhizomagastrodiae_C368-T01_good_116.620
SRR6049664Rhizomagastrodiae_C368-T10_good_131.410
SRR6049665Rhizomagastrodiae_C368-T10_good_131.410
SRP279888GastroGastrodia elata tuber 15.64
JuvenJuvenile tuber14.00
Mother_GastroMother tuber of Gastrodia elata 19.82
Mother_JuvenMother tuber of Juvenile 22.82