Detail information of GWHGAAEX018183/evm.TU.scaffold_90.65


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|332667371|ref|YP_004450159.1|3.00E-22von Willebrand factor A [Haliscomenobacter hydrossis DSM 1100]
nrgi|743872343|ref|XP_010906522.1|0PREDICTED: uncharacterized protein LOC105033421 [Elaeis guineensis]
trEMBLtr|F6GU18|F6GU18_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43682.1}
TAIRAT5G607100Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009719771621981499+
Transcript Sequence

Network for GWHGAAEX018183

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17123.4zf-RING_11871154.80E-09
PF00092.27VWA2694502.20E-22
PF14624.5Vwaint6166881.30E-21
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.100
SRR2545915Juvenile tuber15.890
SRP108465SRR5643513five period of Gastrodia elata45.410
SRR5643514five period of Gastrodia elata29.070
SRR5643515five period of Gastrodia elata46.560
SRR5643524five period of Gastrodia elata39.130
SRR5643525five period of Gastrodia elata47.120
SRR5643528five period of Gastrodia elata65.330
SRR5643658five period of Gastrodia elata42.320
SRR5643659five period of Gastrodia elata27.470
SRR5643660five period of Gastrodia elata25.010
SRR5643661five period of Gastrodia elata30.540
SRR5643662five period of Gastrodia elata35.270
SRR5643663five period of Gastrodia elata26.200
SRR5643664five period of Gastrodia elata23.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.340
SRR6049655Rhizomagastrodiae_C368-T10_good_116.200
SRR6049656Rhizomagastrodiae_C368-T07_good_133.800
SRR6049657Rhizomagastrodiae_C368-T07_good_127.700
SRR6049658Rhizomagastrodiae_C368-T04_good_126.830
SRR6049659Rhizomagastrodiae_C368-T04_good_128.890
SRR6049660Rhizomagastrodiae_C368-T01_good_135.510
SRR6049661Rhizomagastrodiae_C368-T04_good_131.590
SRR6049662Rhizomagastrodiae_C368-T01_good_136.780
SRR6049663Rhizomagastrodiae_C368-T01_good_135.410
SRR6049664Rhizomagastrodiae_C368-T10_good_129.300
SRR6049665Rhizomagastrodiae_C368-T10_good_129.300
SRP279888GastroGastrodia elata tuber 25.71
JuvenJuvenile tuber20.41
Mother_GastroMother tuber of Gastrodia elata 82.35
Mother_JuvenMother tuber of Juvenile 58.36