Gene detail

Detail information of GWHGAAEX018188/evm.TU.scaffold_90.72

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672135759\|ref\|XP_008791554.1\|	PREDICTED: auxin response factor 18 [Phoenix dactylifera]
Swissprot	tr\|Q653H7\|ARFR_ORYSJ	Auxin response factor 18
trEMBL	tr\|A0A061ET58\|A0A061ET58_THECC	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR	AT4G30080	auxin response factor 16

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000097	2133251	2136989	+

Transcript Sequence
>GWHTAAEX018188 AAAGAAAACACTGAATTTTAGCTGTGCGATTTTTCCATTAAAAGTTTTTTTTTTTTACTCTTTTGGCCTGCGACTGCTTTTTGTCTGAGTGGAAAGGGCAATGGACTGCTTTGGGGAAGCTCTCCTCCTTTCCGATAGAGGTGGAGACGGCAGTGAGTGATGAGGGTTTGTTTGTTGAATGCCTGTTATTTTGATGTGATTTAAGAGGCTGCTCAGAGGCTGCTCAGAGGGGATTTTTGTTTTTTTGAAATTTCTCCTCTTTATGTTCATAGGAGCTTCAACGGGCCAAAAAGTTGCGATCTTTTATGCTTTCGGCCTTGAAGTCTTGATAAGAAGAGGGATTCTTTGTCTTTCTTGTGGGCTGAGTTCTTAAGTTTGGGATTATTAGGGTTTCTTGAGGAGTTTGAAGTTGGAGCAAAAGGTTTATTTGGATGTGTGGGATTTCTCCCATTTCCTTCTGATCAAGTGATAAAAAAAGAAGCTTCTTGTTCAGTACAATAATTTGCTGGGAAATATGAAAGAGAACAAATTTACTTCTGAAGAGGAATCAAAGAAGGAAAGTGAAAGGTGCTTGGACTCCCAGCTATGGCATGCTTGTGCTGGTGGAATGGTTCAGATGCCATCAGTGAATTCCAAACTATACTATTTTCCCCAAGGCCATGCTGAGCACGCCCAAACTTCTGTGGATTTTGGCAATTCTCTCAGGATTCCATCTCTGATTCTTTGCCGTGTCATCTCTGTTAAATTCATGGCTGATTCTGTCACAGATGAGGTTTTCACCAAGATACAAATGATTCCTATGAGAGGCAATGAGCCGGATTACAGTGATGATGATGAACACGTTTTAGGCAACGACGGATCGGATTTGCACGAAAAGCCTGCATCTTTTGCGAAGACACTGACTCAATCCGATGCCAATAATGGCGGTGGATTCTCTGTTCCGAGATATTGTGCGGAGACTATATTCCCGAGATTGGATTACTCAGCCGACCCCCCAGTTCAAACGGTTTTGGCTAAGGATGTCCATGGCAAGGTTTGGAAATTTCGCCATATTTATAGAGGCACGCCTCGTCGGCATTTGCTCACCACCGGTTGGAGCAATTTTGTCAATGAGAAGAAGCTTGTGGCCGGTGATTCCATTGTGTTCCTAAGAACCGATAATGGCGATCTCTGTGTGGGTATCCGACGGGCGAAGCGGGGGATTGGAGGTGGACCTGAGGTGCCAGTGGGATGGAATCAGCCTGCGGGAAATTGCATGTATGGCGGATTTTCTGTTTTCTTGAGCGACGATGAGAGCAAGTTTAGTAGAGGAAATGGCCATGGAAGCGGCATCAATTCCTGTTCGAATTTGAGGGGAAGAGGCAGAGTGAAGGCGAGTTCTGTGACTGAGGCTGCGGCATTAGCAGCCAGAGGGCAGCCGTTTGAAGTTGTTTACTATCCTAGGGCCAGCACACCTGAGTTCTGTGTGAAGGCATCTGCAGTGAGAGCTGCAATGAGGGTTCAGTGGTGCTCAGGAATGAGGTTTAAGATGGCTTTTGAGACTGAGGATTCCTCAAGGATAAGTTGGTTTATGGGAACCATATCTTCTGTTCATGTTGCTGATCTTATGAGGTGGCCTGGATCACCTTGGAGACTTCTTCAGGTTTCGTGGGATGAGCCTGACCTCTTGCAAAACGTGAAGCGCGTGAGCCCGTGGTTGGTGGAACTCGTCTCTAATATGCCGGCCATCCACATAGCATCCTTCTCTCCTCCGAGAAAAAAACTGCGGATTCCCCCGCATTCCGAATTCTCTCTCGATGTTCAGCTTTCGGACTCACCTTTCCACGAAAACACCCTCATTCCCAACGGCAGCAGCCCCTTGTGCTGTCTTCCAGACGGCACTTCTGCAGTTGGCATACAGGGACCCAGGCATAGTCAGTATGGTGCAAACCTACCAGAACTCCACTTTGGAAAGTTGCAGTCTGGGCTGCTCCATACTGGACTCCATCGATTTGATCACTTCGCTCCTCCCAGAATCTCCGCAGGAGTCATTGTTCCAAGTTCCTCCCTTCAAGAAGATGTGTCCTGCATTCTTACCATTGGAAACCCTTCTCATGGCTCAAGAAAAAGGGAATGTGGCGATGAAAGCAGTGGTGCGGCTGCACCCCATTTTATGCTTTTCGGTAAGCCTATACTCACTGAGCAGCAGCTCTCACTCAGCCCAAACAGCTCTTCGAATGTGAATTCTGACAGAACGGCAAACATGTCGGGATCCTCGTCGGTTCATCAAACTGTCACTGGGGATAACTCCTCTTCCGAAGGGTTTCCTTGGAACCGGGATCGGAAAGCGAATGAGCCCGGCTTGAACTTTGGCCACTGCAAATTGTTCGTTGAATCCGAGGACGTGGGCCAGACTCTGGACCTGTCGTCTTTTGGTTCGTATGAGGAGCTGTATAGAAGGCTAGCAAGCATGTTTGGAATCAAGAAATCGGAGCTGAACAGCCGAATCCTCTATCGGGATATAGCCGGCGTGGTCAAGCACACTGGAGAAGAGCCTTTCGCTGATTTCATGAGAGTTGCAAGGAAGCTAACAATCTTTATGGATTCGAGTGGCAAAAACATTGTGTCATTGTAGGAGATTTCTCCTTAGTTTCTCTCCAAAGTTTAATCCTCATCTAGTTATTTGTAGGAGATTTCATGAAAGTCATGAAAGTTTTTTTTTTCAAACATTTATCTGTCTTTTTGAACAGCCAAGGGCTTTGATTATGAACTTGCTATTTGTTTCTGCTGAATTTTATTTATGTAGAATGATCAGTTGTTATCCATTTGAAGCTTTTTCTATAGTGGTTTTATGATTGGTATGCTTTTCTACTAATGAAAGATGATGCTTCAAACCTTTCTATATCGAACATGATGTATTAATGATTACTGAAGATATGATGCATATCATAGTTTGTTTGTTTTTGTG

Network for GWHGAAEX018188

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.20	B3	125	226	1.30E-22
PF06507.12	Auxin_resp	293	376	1.50E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005515	Molecular Function	protein binding
GO:0003677	Molecular Function	DNA binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.460
SRP064423	SRR2545915	Juvenile tuber	14.480
SRP108465	SRR5643513	five period of Gastrodia elata	21.970
	SRR5643514	five period of Gastrodia elata	22.710
	SRR5643515	five period of Gastrodia elata	14.880
	SRR5643524	five period of Gastrodia elata	22.770
	SRR5643525	five period of Gastrodia elata	21.850
	SRR5643528	five period of Gastrodia elata	15.460
	SRR5643658	five period of Gastrodia elata	21.460
	SRR5643659	five period of Gastrodia elata	11.140
	SRR5643660	five period of Gastrodia elata	9.410
	SRR5643661	five period of Gastrodia elata	10.740
	SRR5643662	five period of Gastrodia elata	9.260
	SRR5643663	five period of Gastrodia elata	12.340
	SRR5643664	five period of Gastrodia elata	8.520
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.770
SRP279888	Gastro	Gastrodia elata tuber	9.22
	Juven	Juvenile tuber	26.64
	Mother_Gastro	Mother tuber of Gastrodia elata	18.28
	Mother_Juven	Mother tuber of Juvenile	10.38